BAC Information

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BAC

Clone NameMSMg01-122I07
Chromosome11 (Build37)
Map Location 7,458,101 - 7,458,826
singlet/doubletsinglet
Overlap genenone
Upstream geneCcm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
Downstream geneLOC665380, Tns3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122I07.T7 (MSMg01no122_i07.b1)MSMg01-122I07.TJ (MSMg01no122_i07.g1)
ACCAG332359AG332360
length9821,024
length of high quality
(start - end)		733 (82 - 814)726 (126 - 851)
definitionCHROMAT_FILE: MSMg01no122_i07.b1 PHD_FILE: MSMg01no122_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:03 2005CHROMAT_FILE: MSMg01no122_i07.g1 PHD_FILE: MSMg01no122_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATTTTTNNNTTACAATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGGAATTATTAGTCCATAAATCATCTTGATAGGCTAAAA
ACAGTAAAAATACCCCTATTTCTCTACCCCTTAAATTATCTCTTTTAAAT
AATGCATTCATACATATATCATGAGCTGTGGTCATATCCATCCATCCCTC
TAAACTCTCTTATTTACCTTCATTTCTACCAACTATTTTCCAATTTAGGG
TAATGAAAGTAAATATTCACCTATCATCTCCCAGAATGTGAGAAGGTGTG
TGCTCACTGACTTAGCCAATTACCTCAATTTGATTCAGTGTCCATCAGAT
TACTAATCTTGATTGTCAATTTATCACACCTAGGAAAAAAAGAACCTGGG
TTGAAGAAGTGCATCCATTAGATTGCCCTATGGGCATGTCTATAAAGGAT
GGTGTTGATTGATATTGGAGAGTCCAGCACATTGGGGACAATACCATCTT
TGGGCAATTGGTCCTGGGCTGTATAAGTAATCAGGGACATGGGAGCAAGT
CAACAAGCTGCTTTCTTCTGTGGTCTCTTCTTGAATTCCTGCCTCCAGAT
TCCTGTTGTGAGTTTTTACTTTGCCCTCCATCTGTGATAGACCAGGAAAC
CTCTAAGCTAGATAAAGTCATTCCTCCCCCAAGTAGCCTTTAGCTCTAGT
GACCATCACAGCACCAGGACACAGACCAGAGCAGTCGTCACAGATGTCTG
GCTTCCTGTTTTTATACTTGGAAGCCATTCTTGAGCTGGTTTCTTCAGTG
AGGTCCCAATTAATTTAGAAATTATTTTTTCCCATGCTATAAGTACAATA
AAAGAAACATGCTTGTTGAATTTGTAAAGTTCAAAGAAACCTAATATGTG
NAATGTTTGGAAAACGGGTTGGCTTCCCATCAAATCTTAAATGCCCTGGT
TTTCTTTCTTTGAACTTTGGACCCCCCCCTGG

CAACTGTTTNTTTAAACAAGTGAGGCTGGGGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCATTACGCAATTGGT
TTATGAGAGTGCTAACCCTTTCGAGCTGTGCCGCTATTCGGCTGCACAAA
GGACAGACAGACTTAGTGGCATATATACATCTTTGTGCCGAGACTGGGCC
ATCATATAATCAGGGTTTGGCCTTGGCCACTGCTTTGCAAGAAACCACTG
TTCAAGCAATGCTTGCACAGAAACGAGGGAAAATGCATGTTTTAAGTGTG
GAAGTTTGGGCCATTTTAAAAATGATTGTCCTAAGAATAGAGGTGCTGAG
AGTGGGCAAGCAAGCCGTGCTCCAGAAGTTTGTCCTCGATGCAGGAAGGG
CAACCATTGGGCTAGGGAATGTAAATCCAAGACAGACATTCAGGTCTGTC
CATTGCCTGGAAATGAGAAGAGGAGCCAGCCTCAGACCCTGAGAAACCCA
CAGCATGCAGCTTATGGGGCCATGAAGCTGCTGCCCAGCCAAAGAAATCT
GTTTTTGAACTTTCCAGGGCAACCCCAGAAAGTGCAGAATTGGACCTCTG
TTCCACCACCCACTCAGTATTAACTCCAGAAATGGGAGTTCAAACTCTGC
CTGCAGGAGTTTTTGGACCTCTACCTGCAGAAACTTGGGGATTTCTTTTA
GGACGAAGCAGTTCTATTGTAAAAGGTCTGCAGATTTATCCAGGTGTTAT
AGATAATGATTATGAGGGAGAAATTAAAATCATGGCTGCTTCCCCCATGG
TATTATAAACTTTACCCTGCTAATCAAAGAATTGCTCAACTTATCTTAGT
TCCTTTACATCTGCTACCATCCCGATTTGTTAAGAATGAGAGAGGACAAA
GTGACTTTGGCTCCTCTGATGTGTACTGGGNTCAATCTATTACTAATCCG
AAAACCTAACCTTTAATTTGAAAATGGAAGGAAAAAGCCTTGGAAGGGAT
TAATAGATACCTGGAAGCTTGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_i07.b1 MSMg01no122_i07.b1 CHROMAT_FILE:
MSMg01no122_i07.b1 PHD_FILE: MSMg01no122_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:03 2005
         (733 letters)



>mm_chr11_7457901_7459033
          Length = 1133

 Score = 1297 bits (671), Expect = 0.0
 Identities = 715/733 (97%), Gaps = 7/733 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcttgataggctaaaaacagtaaaaatacccctatttctctaccccttaaattatct 60
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 201 tcatcttgataggctaaaaacagtaaaaatacaactatttctctaccccttaaattatct 260

                                                                       
Query: 61  cttttaaataatgcattcatacatatatcatgagctgtggtcatatccatccatccctct 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 cttttaaataatgcattcatacatatatcatgagctgtggtcatacccatccatccctct 320

                                                                       
Query: 121 aaactctcttatttaccttcatttctaccaactattttccaatttagggtaatgaaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactctcttatttaccttcatttctaccaactattttccaatttagggtaatgaaagta 380

                                                                       
Query: 181 aatattcacctatcatctcccagaatgtgagaaggtgtgtgctcactgacttagccaatt 240
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 381 aatattcacctatcatctcccagaatgtgagaaggtgtgtgctcactggctcagccaatt 440

                                                                       
Query: 241 acctcaatttgattcagtgtccatcagattactaatcttgattgtcaatttatcacacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctcaatttgattcagtgtccatcagattactaatcttgattgtcaatttatcacacct 500

                                                                       
Query: 301 aggaaaaaaagaacctgggttgaagaagtgcatccattagattgccctatgggcatgtct 360
           ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 501 aggaaaaaaagaacctgggttgaagaactgcatccgttagattgccctatgggcatgtct 560

                                                                       
Query: 361 ataaaggatggtgttgattgatattggagagtccagcacattggggacaataccatcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaaggatggtgttgattgatattggagagtccagcacattggggacaataccatcttt 620

                                                                       
Query: 421 gggcaattggtcctgggctgtataagtaatcagggacatgggagcaagtcaacaagctgc 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggcaattggtcctgggc-gtataagtaatcagggacatgggagcaagtcaacaagctgc 679

                                                                       
Query: 481 tttcttctgtggtctcttcttgaattcctgcctccagattcctgttgtgagtttttactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tttcttctgtggtctcttcttgaattcctgcctccagattcctgttgtgagtttttactt 739

                                                                       
Query: 541 tgccctccatctgtgatagaccaggaaacctctaagctagataaagtcattcctccccca 600
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgccctccatctgtgatagacctggaaacctctaagctagataaagtcattcctccccca 799

                                                                       
Query: 601 agtagcctttagctctagtgaccatcacagcaccaggacacagaccagagcagtcgtcac 660
           ||||||||||||||||||||||||||||||      |||||||||||||||||| |||||
Sbjct: 800 agtagcctttagctctagtgaccatcacag------gacacagaccagagcagttgtcac 853

                                                                       
Query: 661 agatgtctggcttcctgtttttatacttggaagccattcttgagctggtttcttcagtga 720
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 854 agatgtctggcttcctgtttttatacttggaagccattctccagctggtttcttcagtga 913

                        
Query: 721 ggtcccaattaat 733
           |||||||||||||
Sbjct: 914 ggtcccaattaat 926


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 733
Length of database: 1133
Length adjustment: 10
Effective length of query: 723
Effective length of database: 1123
Effective search space:   811929
Effective search space used:   811929
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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