BAC Information

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BAC

Clone NameMSMg01-123C06
Chromosome11 (Build37)
Map Location 56,767,222 - 56,767,906
singlet/doubletsinglet
Overlap genenone
Upstream geneNmur2, LOC100040816, LOC624168
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123C06.T7 (MSMg01no123_c06.b1)MSMg01-123C06.TJ (MSMg01no123_c06.g1)
ACCAG332824AG332825
length1,2871,215
length of high quality
(start - end)
335 (133 - 467)684 (90 - 773)
definitionCHROMAT_FILE: MSMg01no123_c06.b1 PHD_FILE: MSMg01no123_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:27 2005CHROMAT_FILE: MSMg01no123_c06.g1 PHD_FILE: MSMg01no123_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATATTGNNNNNAAACATTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCAAGGCCCATACCTAAACCTGTTAAAAGCAATCTACAGCA
AACCAGTAGCCAACATCAAACTTTATGGAGAGAAGCTGGAAGCAATCCCA
CTAAAACCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAA
CATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCA
AGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGAT
GATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCT
AAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAA
ACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAA
ATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCT
TGGCGAGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCA
AATCTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTC
CCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCC
AAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAAT
TCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGGAATAACACA
AAACCTAGGATAGCCAAAAGTCTTCCCCAGGATAAAAGAACTTCCTGGGT
AATCACCATGCCAGACCTACAGCTTTACTACGGTAGCATTGTGATAAAAA
CTGCCTGGCACTGGTATACAGACAGACAAGTATACTCATGCAACTACAAT
TGTAGAACCTCAAAATGACCCCCCCCCCCTAGGGTCCCTTGAACTTTCCA
CCAGGCATCTAAACCCACCCAGGGGACCAATCACCCCATTTTTCAACACT
TGGGGCTGGCCCCAACCGGGTTGCTATCCCGCTCTAACAAGGCCAATCCA
ATCCCTACTATCCCCCTTTGTACTCACCGCCCAATCCCTATTGCAATCAG
GTAATCTTCCCCTTCAAACCCTAACAACCCTGGACCCCTTTCACCTCGTG
CAAACGCGGCCGTAAACCCTCTTCTCCAAATCTGGTCACCCCCCGTACAA
ATTTTCTCTTACTACATACTACCCCTGCTCTTTGTCCTGGTCCTAACCCT
CACATCTCTCTCCCAGGCGTACTCCCTGTCCTCTATC
CGTCTTTTTNNNNCATGATGGNAGNCGTGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTGAAGGGAAGGCAGCATTA
AGCCATTTGGGCTACACTCTAATTTCTTAGATGGATCAATCCAGAAGCCA
AAACCCAACTGTAGGGCTTAAATGCTGTTAAAAGCATCCAGTCAATTTCT
TGGGCTTGACAGGCATGGAAACTGAGGCTGGAACCACCTCAGTTAGGAAT
GAAGTGGGAACACAAATCATAGTTCTATATTTCTTTTGCTTCATTCCCTC
CACCTTTCATTTAGAATTTCCTTAGGGTTTTCTCCACTTATCTAATATAA
AAATGCATAAAAATGAAGCCATAGTCCCTTGTTGCTGACTAAGAGTCAGA
AGTCAGGCATCCTGAGAGGAGTGGGACTTGCTGCCCTTTACTTTGGGGGA
ACAGGACCACTCATCCTGTGGAACCAGATGTAGGCACAGACTCCTAGGTT
CTCTGGAATGATAATTCCATGTGGTCTGCCTGGGGCCATGCACTAAATGG
CTTGTTGAGGAAGAGATGACCCATTCAGAGACCTTACTAGGATCTCCTCC
TCTTCCTGGCTCACACCACCTCCATTCCCAAGCCATACTCAAGCCATAAC
CACGTCTGTATGTTCTGCTTTTTCTTTAGTTTTTTTTAAAATAATTTCGT
CTTCTTTTATGAATAAGTCTGCCATTAATATGAAAGTCTATAAAACAAGC
CATTAAAACCTGTGTTCCAGCATCTCAAACATGCTTCCAACCTTTAGAAG
TCCCTTTGGATAGGGAAGCTCCAACATGGGGCCCTTTCAGGGCCCCTTTA
ATAGCAAGGCGAGGTCAGGGTACCCTATTCAAGTTCCCCAAAATAGGTCA
AGGTCAGTGCATATTTCCTAGGTATGAACCAAGTGATAATTTTCAAAATA
ACTTTGCCTTGGACTTTTGGGGAACCAGTTTTTTTGTCCCCCATTCCCTA
AAATAACCGTTAACCTTGGTGTTTCTCATTTATAAAACCCTTTCCTATTC
CCTCCTTTGACCATCCCCTTAATAACTCTATCTGATCTCGAACTCCTTAT
CTCCCTTTTTAAAAAAAATTGTTCCCCTTCATCCCAAGGTTCTCTTTCTT
TTTTTAACACTCTTTCTCCATAGTATTCCCTGCTATTTCCCTGGACCACA
ACCTCTTCTTACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_c06.g1 MSMg01no123_c06.g1 CHROMAT_FILE:
MSMg01no123_c06.g1 PHD_FILE: MSMg01no123_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:27 2005
         (684 letters)



>mm_chr11_56767022_56768106
          Length = 1085

 Score = 1222 bits (632), Expect = 0.0
 Identities = 672/688 (97%), Gaps = 7/688 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcagcattaagccatttgggctacactctaatttcttagatggatcaatccagaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 aggcagcattaagccatttgggctacactctaatttcttagatggatcaatccagaagcc 826

                                                                       
Query: 61  aaaacccaactgtagggcttaaatgctgttaaaagcatccagtcaatttcttgggcttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 aaaacccaactgtagggcttaaatgctgttaaaagcatccagtcaatttcttgggcttga 766

                                                                       
Query: 121 caggcatggaaactgaggctggaaccacctcagttaggaatgaagtgggaacacaaatca 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 765 caggcatggaaactgaggctggaaccacctcggttaggaatgaagtgggaacacaaatca 706

                                                                       
Query: 181 tagttctatatttcttttgcttcattccctccacctttcatttagaatttccttagggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tagttctatatttcttttgcttcattccctccacctttcatttagaatttccttagggtt 646

                                                                       
Query: 241 ttctccacttatctaatataaaaatgcataaaaatgaagccatagtcccttgttgctgac 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 645 ttctccacttatctaatataaaaatgcattaaaatgaagccatagtcccttgttgctgac 586

                                                                       
Query: 301 taagagtcagaagtcaggcatcctgagaggagtgggacttgctgccctttactttggggg 360
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| 
Sbjct: 585 taagagtcagaagtcagacagcctgagaggagtgggacttgctgccctttactttgggga 526

                                                                       
Query: 361 aacaggaccactcatcctgtggaaccagatgtaggcacagactcctaggttctctggaat 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aacaggaccactcagcctgtggaaccagatgtaggcacagactcctaggttctctggaat 466

                                                                       
Query: 421 gataattccatgtggtctgcctggggccatgcactaaatggcttgttgaggaagagatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gataattccatgtggtctgcctggggccatgcactaaatggcttgttgaggaagagatga 406

                                                                       
Query: 481 cccattcagagaccttactaggatctcctcctcttcctggctcacaccacctccattccc 540
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 405 cccattcagagaccttactaggatctcctcttcttcctggctcacaccacctccattccc 346

                                                                       
Query: 541 aagccatactcaagccataaccacgtctgtatgttctgctttttctt---tagttttttt 597
              ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 345 ---ccatactcaagccataaccacgtctgtatgttctgctttttcttctctagttttttt 289

                                                                       
Query: 598 -taaaataatttcgtcttcttttatgaataagtctgccattaatatgaaagtctataaaa 656
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 288 aaaaaataatttcgtcttcttttatgaataagtctgccattaatatggaagtctataaaa 229

                                       
Query: 657 caagccattaaaacctgtgttccagcat 684
           ||||||||||||||||||||||||||||
Sbjct: 228 caagccattaaaacctgtgttccagcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1085
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1075
Effective search space:   724550
Effective search space used:   724550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)