BAC Information

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BAC

Clone NameMSMg01-125L16
Chromosome11 (Build37)
Map Location 4,303,200 - 4,303,706
singlet/doubletsinglet
Overlap geneHormad2
Upstream geneLimk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif
Downstream geneMtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125L16.T7 (MSMg01no125_l16.b1)MSMg01-125L16.TJ (MSMg01no125_l16.g1)
ACCAG334742AG334743
length728737
length of high quality
(start - end)
507 (71 - 577)124 (128 - 251)
definitionCHROMAT_FILE: MSMg01no125_l16.b1 PHD_FILE: MSMg01no125_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:51 2005CHROMAT_FILE: MSMg01no125_l16.g1 PHD_FILE: MSMg01no125_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTC
CTACACATTTTCCAGTCAGACAAGTGTGCTGACTTTCACTATTCACAAGG
GAAACAAAAATGAAAACCACAACAACTCATCACTGCCACCCACTAGAATG
CTTATCCCTAACAAGATGAAATATGCTCAGCATACAAAATATACCTGATA
AAAATGATAGAAATCGCCAAAGTGGATGAAGATGCAAAGCAGCTGTGTGG
ACCTCGGCACAAGCGCTTGGGAAGCTGTACCTAGCCGGGCTAACTGCATG
CATGCCCTTTGACTCAGCTGTCCACTCCTTCCAACCTGATTCCCACCGTC
AATATGTCCTGACCGAGCACCGAGCACCAGAAGTCTTAGCAGTGCCTGTC
CTAGTGACCCCAAGTCAGAGCACATCCAAATGGATACCAGCGACAGCATG
AACAAAAAATGCATGCTAACAGAAGGAAGGATGCCAATGCTCTTGCTAAC
TGGAGTATGAACTGTGAGGTTAAAACTATGTTTCTAAGCAGCTGGTAGTA
TCCCACCTCTTGATCTGATTGATGCTTTTGTCAGACTATTCAGCAGGGTC
AAGATGTGTTGAGACAAGCCAGAACCCAGGGAGAACAACTTAATGAGGCT
CTCACTCTCTCCCCTGGGCATCTTGCTTGCCTGACCCATGTCCCCGCCGT
CCCTACTGTTTGGCTTGCGTCCGTTTAC
CATTGACAGTGTGTAGGCCTGGAGGCCGCCGGTTCCTGCACCGTTAGGNG
ACACNANAGAATTACANGCACGCAGCGAAGGAAACATGGAAGGACTCAAA
TCTACCCACTGGGNAGCAAAATCCCAATTTAGGAAATAGGTTGTTAGAAC
ATGAAGCTTACATCTTTTGTAAAGCAGCTAAAAGCACTGACTGCTTGGAC
AGAACCTGAGTTCAGTTCCCAGCACCCACATGGTGGCTCACAGCTGTCTG
TATCTCCAGTTCCAGGGATCTGACATATTTCCTGACCTCTAACTCCTCTA
GGCATATGGTACACGTGTTTGTGTTTTCGAAACACACACACACATAAACG
AAACANACACCAAAACACCGCCAGCAGATCCCTAGCTACAGATCTGCAAT
GCATGCCGAAGATTAAAACTAGCATGTATTAGATAAACTACGACTACCAC
AGTTTACCTTGGCCAGAGAAAGATATTAATCTTGTTATCAATCAACTGAA
CTATTACTTCCATTTCCGGCACGCCCAAGTTTCCCTCTTTCCTTACCTTC
CTCTTCCCATTTTTCCCTCCTTAAGCTACCCCCACCAATTGGTTTTGGTT
GACCTTCTACGGCCCTCGGGTCCTCCTTACGTCCCCTGGGAAAACCTCTT
CCCTTCTTCCGTACCACCTGGAAACCCTTCTTCTTTTATCTCTGGCTGGC
AAACTCTCTACCTTTTTACACAACCTTTATATTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_l16.b1 MSMg01no125_l16.b1 CHROMAT_FILE:
MSMg01no125_l16.b1 PHD_FILE: MSMg01no125_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:51 2005
         (507 letters)



>mm_chr11_4303000_4303906
          Length = 907

 Score =  973 bits (503), Expect = 0.0
 Identities = 506/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtgtgctgactttcactattcacaagggaaacaaaaatgaaaaccacaacaactcat 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtgtgctgactttcactattcagaagggaaacaaaaatgaaaaccacaacaactcat 260

                                                                       
Query: 61  cactgccacccactagaatgcttatccctaacaagatgaaatatgctcagcatacaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgccacccactagaatgcttatccctaacaagatgaaatatgctcagcatacaaaat 320

                                                                       
Query: 121 atacctgataaaaatgatagaaatcgccaaagtggatgaagatgcaaagcagctgtgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacctgataaaaatgatagaaatcgccaaagtggatgaagatgcaaagcagctgtgtgg 380

                                                                       
Query: 181 acctcggcacaagcgcttgggaagctgtacctagccgggctaactgcatgcatgcccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctcggcacaagcgcttgggaagctgtacctagccgggctaactgcatgcatgcccttt 440

                                                                       
Query: 241 gactcagctgtccactccttccaacctgattcccaccgtcaatatgtcctgaccgagcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactcagctgtccactccttccaacctgattcccaccgtcaatatgtcctgaccgagcac 500

                                                                       
Query: 301 cgagcaccagaagtcttagcagtgcctgtcctagtgaccccaagtcagagcacatccaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgagcaccagaagtcttagcagtgcctgtcctagtgaccccaagtcagagcacatccaaa 560

                                                                       
Query: 361 tggataccagcgacagcatgaacaaaaaatgcatgctaacagaaggaaggatgccaatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggataccagcgacagcatgaacaaaaaatgcatgctaacagaaggaaggatgccaatgc 620

                                                                       
Query: 421 tcttgctaactggagtatgaactgtgaggttaaaactatgtttctaagcagctggtagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttgctaactggagtatgaactgtgaggttaaaactatgtttctaagcagctggtagta 680

                                      
Query: 481 tcccacctcttgatctgattgatgctt 507
           |||||||||||||||||||||||||||
Sbjct: 681 tcccacctcttgatctgattgatgctt 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)