BAC Information

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BAC

Clone NameMSMg01-126M01
Chromosome11 (Build37)
Map Location 39,833,508 - 39,833,962
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126M01.T7 (MSMg01no126_m01.b1)MSMg01-126M01.TJ (MSMg01no126_m01.g1)
ACCAG335482AG335483
length699699
length of high quality
(start - end)
470 (70 - 539)459 (77 - 535)
definitionCHROMAT_FILE: MSMg01no126_m01.b1 PHD_FILE: MSMg01no126_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:15 2005CHROMAT_FILE: MSMg01no126_m01.g1 PHD_FILE: MSMg01no126_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXGCGCCGGTGCAAGGACTTCCTAGGACATTGGAACAT
TGGTGGAGGCTAATCTAACTTAGCTGTATGTCAAAATCAATCCTTAAAGG
CATTTATAATAAAACAATATTGAGGGAGAGCACAGAGATCCATACACTGG
ACTAACAGGTTTGGGGACAGGTTTGGAGCATACATGCTATGGGAATGCCA
AGGTTCCAGGAGGTTAAGTTTCCGTGAAACTCTGCATCGGGACTGCTTCC
AGGCTTCTAGTCCTATCACAAGAGTCACTACTTCAGAGTATATAGCAGAA
ATGCAAATCAAAACAACCCTGAGATTCCATCTCATACCAGTCAGAATGGC
TAAGATCAAAAACTCAGGTAACAGCAGATGCTGTCAAGGATGTGGAAAAA
GAGGAACACTTCTCCATTGCTGGTTGGAACTGCAAGCTGGCACAACCACT
CTGTAAATCATTTTGGAGGCTCCTCAGAAAACTGGACTTAGTTCTATTGG
AAGATCCAGCAATACCACTCCTGGGCATATACCCAGAAGATGCTCTAACA
TGTAATAAGGACACATGCTCCACTATGCTCACAGCTGCCTTATTTATAAT
ATCCAGCAGTTGGAAAGAACCTAGATGTCCCCTCATAGACGAATTGTAA
CTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTTGAGCCAGCATTGTGGAAAC
AATTTTTCAGTCTCATTTACATTGGCATGGCATCTTTAACAGTACAGGTG
GTATACTGGATCACAGCTGACATGTAAGACTTTATAAGTACTATTGCTTT
GTATTCTCGAGCACTTGCCTGAGATTGACACGTAAAACTATGCATCACAT
TTGTCTCCTGTAGCCAAAAAATGTCTTTCTTCCATCACTTATTTTCTCTA
ATGAGAACATTTCTATCTAATCAAAGTCACCCAATATCCCACCAAAATCC
TCTTGCTAGGTCTTCCTTGCATATGATTTTTTAAATGACAGTTTGAAATC
CTTGGGGTTGGCTCAGCTGGCAAGGTACTTGCCTTACATACATGAAGAGC
TAAGTTAAATACACCAGGATTCACATTTTTAAAGCTCAATTTAATGGTGG
TAAGTGCCTATACTCCAAGTTTCAGAAAGATATAGACAGAATGATCCCTG
GAACTTGATCATCATATCGTCCAAGCAAATCACAAAGCTCCAAGCTCCAC
AAGATATCGCTAGTACCATGAAAAGTACCCTGGTTCCTGTTTGACGTAAC
GATAGAAATCCCAGTGACCCCCGAGGGACAAAGGATGTTTCCTCCCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_m01.g1 MSMg01no126_m01.g1 CHROMAT_FILE:
MSMg01no126_m01.g1 PHD_FILE: MSMg01no126_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:15 2005
         (459 letters)



>mm_chr11_39833308_39834165
          Length = 858

 Score =  789 bits (408), Expect = 0.0
 Identities = 444/456 (97%), Gaps = 1/456 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttgagccagcattgtggaaacaatttttcagtctcatttacattggcatggcatctt 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 atcttgagccagcgttgtggaaacaatttttcagtctcatttacattggcatgacatctt 260

                                                                       
Query: 61  taacagtacaggtggtatactggatcacagctgacatgtaagactttataagtactattg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 taacagtacaggtggtatactggatcacagctgacatgtaagactttataagtactatcg 320

                                                                       
Query: 121 ctttgtattctcgagcacttgcctgagattgacacgtaaaactatgcatcacatttgtct 180
           |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 ctttgtattctccagcacttgcctgagattgacacgcaaaactatgcatcacatttgtct 380

                                                                       
Query: 181 cctgtagccaaaaaatgtctttcttccatcacttattttctctaatgagaacatttctat 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtagccaaaaa-tgtctttcttccatcacttattttctctaatgagaacatttctat 439

                                                                       
Query: 241 ctaatcaaagtcacccaatatcccaccaaaatcctcttgctaggtcttccttgcatatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctaatcaaagtcacccaatatcccaccaaaatcctcttgctaggtcttccttgcatatga 499

                                                                       
Query: 301 ttttttaaatgacagtttgaaatccttggggttggctcagctggcaaggtacttgcctta 360
           |||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct: 500 ttttttaaatgacaatttgagatccttggggttggctcagttggtaaggtacttgcctta 559

                                                                       
Query: 361 catacatgaagagctaagttaaatacaccaggattcacatttttaaagctcaatttaatg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 560 catacatgaagagctaagttaaatacaccaggattcacatttttaaagcttaatttaatg 619

                                               
Query: 421 gtggtaagtgcctatactccaagtttcagaaagata 456
           ||||||||||||||||||||||||||||| ||||||
Sbjct: 620 gtggtaagtgcctatactccaagtttcaggaagata 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 858
Length adjustment: 10
Effective length of query: 449
Effective length of database: 848
Effective search space:   380752
Effective search space used:   380752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)