BAC Information

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BAC

Clone NameMSMg01-126N08
Chromosome11 (Build37)
Map Location 10,176,600 - 10,300,788
singlet/doubletdoublet
Overlap genenone
Upstream geneAbca13, LOC665435, LOC382483
Downstream geneVwc2, Zpbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126N08.T7 (MSMg01no126_n08.b1)MSMg01-126N08.TJ (MSMg01no126_n08.g1)
ACCAG335539AG335540
length684713
length of high quality
(start - end)
480 (73 - 552)242 (70 - 311)
definitionCHROMAT_FILE: MSMg01no126_n08.b1 PHD_FILE: MSMg01no126_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:22 2005CHROMAT_FILE: MSMg01no126_n08.g1 PHD_FILE: MSMg01no126_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,176,600 - 10,177,077)(10,300,547 - 10,300,788)
sequence
AGTTCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAGGGGCGG
ATTCTTTACATATTTCGAAGAAATTGCTTTCCTGAATATAAATCTAGCAA
GTCATCATTACTAACAAGCAATACGTTTGAACACTTGTCTACTGAAAGTT
TACTTTTAATTAAAGAATCCAACGATAATAGTACTTTTGTAAGCATTTGC
ATTTGTGCATATTGGTGAGAATTTTGATTCTGTATTTTGACACAGGTCTC
TAGATGAGATTAAACAAGTTTCAGCCCCTTACAGAGATGGACAGAGGATA
GATAGGTTAAGGATCCATGCAGCACAGTATGAGCACCTATGGATTTAGTT
TGCTTTTCAGCAGCTGTGATGACATGATTGCTCAGAAAGAAATGGTGAAA
GGACAAGAAAGAGCTGATCTTATTTTATCATCTGTTATTGAAAGAAGTCA
GAGCAGGAACTGGAGCAGAGACCCTGAAGAAGATCTACTGGAGGGCTCAC
AACCAGAGCAAAGCTCAGCTTTCTTCCACAGCCCCAGCCACCTGCCTGTG
TATGTTGCATTCCACATTTGACCGAACCCATCCATGTCATTTCTACCCAG
GTGACTCAAGATGGCAACAAGGTTGAAATTAAAAACTAACTCGTATCAAG
CCAAATGGAATAAACCGGCATCTAGTTTATGACT
TACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATCCTATGGAACAAACCTGAAATAAATTAA
GAAGGTGATCAGTTATGCCCAAGTTGTGTCACTATTGCAGTTGTGAGCAC
ATCTTGCCTGGGAGCCCATAGGCAGGATCCAGTTCTTGATAAGACAGCTA
ATATCCTTCCTTGCAATGTACTGTTAAGCACTGTGAAAGCAATGCAGCAT
AGAGAGAATTTTCTGGTTAGTTCAAGGTTGATTTCTACATCCAAAATGTG
CTATATGTTTACCTTTTTTTTTAGTTGGCTCTTAATGCTTCATTTATATT
ACTCTTCAGGGCTAAGGAATATCATACAATAGGGTGTAGAAAGAGTGTAA
GCGGTAACGACCGTTTTAAAAGTCTGCCTCCTGAGTACATATTTTTAGCA
TTTTGTGTAAACTCTGTCCCATAGTTACCTGGCAACTTCTACGGGTGAGG
TTCTATGCTCATGCTCCATCTAGGGTAGAATAGTCTTCCCCAGGCTGCTG
CTCAACCTAGATTTAGAATGCTTGTGCTTCTTCAGCACCATGCCTGCCTG
CTCAACATCTTGTCTTACACCCTGACAATAATTGCACTTGAATCTCTTAA
ACTATTTTTTAGCCTTATTTACATGTTTACTGTAATAACAATTAGCTTAT
CTAAGGCCGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_n08.b1 MSMg01no126_n08.b1 CHROMAT_FILE:
MSMg01no126_n08.b1 PHD_FILE: MSMg01no126_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:22 2005
         (480 letters)



>mm_chr11_10176400_10177279
          Length = 880

 Score =  878 bits (454), Expect = 0.0
 Identities = 472/478 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgctttcctgaatataaatctagcaagtcatcattactaacaagcaatacgtttgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgctttcctgaatataaatctagcaagtcatcattactaacaagcaatacgtttgaac 260

                                                                       
Query: 61  acttgtctactgaaagtttacttttaattaaagaatccaacgataatagtacttttgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 acttgtctactgaaagtttacttttaattaaagaatccaacgatattagtacttttgtaa 320

                                                                       
Query: 121 gcatttgcatttgtgcatattggtgagaattttgattctgtattttgacacaggtctcta 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gcatttgcatttgtgcatattggtgagaattttgatactgtattttgacacaggtctcta 380

                                                                       
Query: 181 gatgagattaaacaagtttcagccccttacagagatggacagaggatagataggttaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgagattaaacaagtttcagccccttacagagatggacagaggatagataggttaagg 440

                                                                       
Query: 241 atccatgcagcacagtatgagcacctatggatttagtttgcttttcagcagctgtgatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccatgcagcacagtatgagcacctatggatttagtttgcttttcagcagctgtgatga 500

                                                                       
Query: 301 catgattgctcagaaagaaatggtgaaaggacaagaaagagctgatcttattttatcatc 360
           ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct: 501 catgattgctcagaaagaaatggtgaaaggacaagaaagggctgattttattttatcgtc 560

                                                                       
Query: 361 tgttattgaaagaagtcagagcaggaactggagcagagaccctgaagaagatctactgga 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 tgttattgaaagaagtcagagcaggaactggagcagagaccatgaagaagatctactgga 620

                                                                     
Query: 421 gggctcacaaccagagcaaagctcagctttcttccacagccccagccacctgcctgtg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggctcacaaccagagcaaagctcagctttcttccacagccccagccacctgcctgtg 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no126_n08.g1 MSMg01no126_n08.g1 CHROMAT_FILE:
MSMg01no126_n08.g1 PHD_FILE: MSMg01no126_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:22 2005
         (242 letters)



>mm_chr11_10300205_10300846
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcctatggaacaaacctgaaataaattaagaaggtgatcagttatgcccaagttgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 catcctatggaacaaacctgaaataaattaagaaggtgatcagttatgcccaagttgtgt 525

                                                                       
Query: 61  cactattgcagttgtgagcacatcttgcctgggagcccataggcaggatccagttcttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cactattgcagttgtgagcacatcttgcctgggagcccataggcaggatccagttcttga 465

                                                                       
Query: 121 taagacagctaatatccttccttgcaatgtactgttaagcactgtgaaagcaatgcagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 taagacagctaatatccttccttgcaatgtactgttaagcactgtgaaagcaatgcagca 405

                                                                       
Query: 181 tagagagaattttctggttagttcaaggttgatttctacatccaaaatgtgctatatgtt 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 404 tagagagaattttctggttagttcaagcttgatttctacatccaaaatgtgctatatgtt 345

             
Query: 241 ta 242
           ||
Sbjct: 344 ta 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)