Query= MSMg01no127_o13.b1 MSMg01no127_o13.b1 CHROMAT_FILE:
MSMg01no127_o13.b1 PHD_FILE: MSMg01no127_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:49 2005
(364 letters)
>mm_chr11_53589125_53589888
Length = 764
Score = 661 bits (342), Expect = 0.0
Identities = 357/362 (98%), Gaps = 2/362 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcacttcttcgctg-acctgttggcctggtttaaaaggcatgctgggatgctt 62
|||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaattctcacttcat-gctgtacctgttggcctggtttaaaaggcatgctgggatgctt 506
Query: 63 taatctggctctggctctgcctccaacagcttcccccttctcccagaacccagaaggacc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taatctggctctggctctgcctccaacagcttcccccttctcccagaacccagaaggacc 446
Query: 123 tagaagcctcttacctcgagggctgtcaatctctggttcctctttgcagctgaagtctcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagaagcctcttacctcgagggctgtcaatctctggttcctctttgcagctgaagtctcc 386
Query: 183 atagacagaagagagctgggtccctggctcattgagcaagtatcccttgccatcgatgtg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atagacagaagagagctgggtccctggctcattgagcaagtatcccttgccatcgatgtg 326
Query: 243 tgtcggctgccactcagactgttcaaagagctgggaagagagcatgaagccatcagctgc 302
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 325 tgtcggctgccactcagactgttcaaagagctggggagagagcatgaagccatcagctgc 266
Query: 303 ctgctagtgcactcaccctgtggcccttcccttgggtgacctaacccttcccaagcagga 362
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgccagtgcactcaccctgtggcccttcccttgggtgacctaacccttcccaagcagga 206
Query: 363 tc 364
||
Sbjct: 205 tc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space: 268025
Effective search space used: 268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_o13.g1 MSMg01no127_o13.g1 CHROMAT_FILE:
MSMg01no127_o13.g1 PHD_FILE: MSMg01no127_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:50 2005
(504 letters)
>mm_chr11_53439221_53440124
Length = 904
Score = 561 bits (290), Expect = e-164
Identities = 487/636 (76%), Gaps = 134/636 (21%)
Strand = Plus / Plus
Query: 1 tttccctgagcctttggctgcatgtcttctgcctatgtcttcgaaacgcccagataagga 60
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 71 tttccctgagcctttggctgcatgtcttctgcctatgtcttcgaaaggtccagataagga 130
Query: 61 accatgatcacagacatagagaggaccctaccaaagtacatgcactagagaagagggtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 accatgatcacagacatagagaggaccctaccaaagtacatgcactagagaagagggtgt 190
Query: 121 gtggacaagtgtctgtgtggccttgggctcctctgttccctgagatgcctgggacgcttt 180
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 191 gtggacaagtgtctgtgtggccttgggctcctctgtttcctgagatgcctgggacgattt 250
Query: 181 ctcactagagagagagagagaaagagagagaga------gacagaga------------- 221
||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 251 ctcacgagagagagagagagagagagagagagacagacagacagagagagacagagagag 310
Query: 222 -----------cagagacagaga----cagagacag-g-----cag-g------------ 247
|||||||||||| ||||||||| | ||| |
Sbjct: 311 acagagagagacagagacagagagagacagagacagagagagacagagacagagagaaac 370
Query: 247 ------------------------------------------------------------ 247
Sbjct: 371 agacagacagagagaaacagacagacagagagaaacagacagacagagagaaacagacag 430
Query: 248 -cttagagatagaga------------------gagacacacacacagacacagagagag 288
| ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 431 acagagagacagagacagacaggcagagagatagagacacacacacagacacagagaga- 489
Query: 289 acagagaaagcacagttgacatcagcagctattctcctctgtaaggatcatgcccccctg 348
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 490 -cagagaaagcacagttgacatcagcagctattctcctctgtaaggatcatgtgtccctg 548
Query: 349 cagcctcagcctcaggcgaaaagaaggcacttctggcagggttacagctgtggccatccc 408
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cagcctcagcctcaggcgaggagaaggcacttctggcagggttacagctgtggccatccc 608
Query: 409 aggccggatcctttcctggaattgctgagagttctaggacgctgtcctgtctccagccca 468
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 609 aggccggatcctttcctggaattgctgagagttctaggacactgtcctgtctccagccca 668
Query: 469 agtcctgatctgtcccttccatggacctcaagaatg 504
||||||||||||||||||||||||||||||||||||
Sbjct: 669 agtcctgatctgtcccttccatggacctcaagaatg 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
