BAC Information

Click to search

BAC

Clone NameMSMg01-128E07
Chromosome11 (Build37)
Map Location 114,265,279 - 114,265,645
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739, LOC634710
Downstream gene4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128E07.T7 (MSMg01no128_e07.b1)MSMg01-128E07.TJ (MSMg01no128_e07.g1)
ACCAG336586AG336587
length698704
length of high quality
(start - end)
365 (43 - 407)443 (75 - 517)
definitionCHROMAT_FILE: MSMg01no128_e07.b1 PHD_FILE: MSMg01no128_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:18 2005CHROMAT_FILE: MSMg01no128_e07.g1 PHD_FILE: MSMg01no128_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGAA
TTCATTCACTCACCATTCACCTTTATCCAGACCAAATTCACACACAGCCA
TGCTAGGGACCTTCCTGGGACCTCTGCTTGGAGGGCAGCAGCCCCAGGAG
TTCCCTCTGTGGGCCCGGCAGACCATGTTTGTGACAAGCCATGGCCTTGA
CTGCCATGATCTGCCTCCCCGTATTAGTGTTCCCAGATGAATGAGAGAAA
GAAAACTAGAAATTGTCCAAAAAGATCCAGAACTCTCTAGAATGTTCCAG
AAATCTACAGGCTTGTATAACTCAGCAGTGCTATACCAGTGCTATGGTTG
GAGCATGGCTGTCTGACTAGATAAACTTGGCACTCTGTTTTATGGAGTCT
GGAACCTCATAAAACGCTGATCTTCTTGTTGGTCTTCCCTATAGGGTTCC
CAGATAAACACTAAGTTCAAGGACTTCTTGAGGTACCTATAATCTAGTAC
ATCCCATCCTCCAGATCCATGAGTCCAGACAAGTCTCTTTTCACTATGCT
TTCACCAGTCTTGTCTATTCTCTATCATTCACAGGATATGGTTTAGTTTA
TATTGCCTGTGCCCTCCTCCACCCTTCTGATATTGTTGTGCTCTATTATA
GTTTAGATTCACATTCCAGCTTTTTCTGCCATCTGTTTAGGCTCCCGC
TTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTAGGGCTTGGGAGGAATATGTGTT
CCAAAGTCGCTGGATGTATCCCACAAACATCAATTAGGTCAGATTGATTG
ACAGGGTTATTCAGAACTCCTTTATATGTGTTCATTTTAAAAAAGATCTT
TTATCAATTATTCAGAGAGAGGCTTTGCAGCCTCTCGCTATGATTATGGG
TCTATTTCTTTATGCGTGTCAGTGCATTTTCTTCTTAATATCTTTTGACA
GCCTGTTATGGGGTGCATGTATTTTGAGGTTACTGCATTTCCTTGATACA
TAGATCAATCTATCCTCACAGAATGTTCCTTCTTATGTCAGGTAATACTT
TCCATCTTTTAATTTACTCCCCTCATGTCTATATAGGCACCTGCTCTTTC
TAATGGGTACACTTCATACAATATAGCTTTTATTTTTTAAAAAAAGACTT
ATTTTATTTATTATATATAAGCACACTGTAGCTGTCTTCATACACCATTA
GAAGGAATCAAGTCTTGTCACAGTATGGTTGTGATCCACCATGTGTTTGC
TGGGTATTTGAACTCTCGATCTTTTGGATTATCAGGCAGTGTTCTTAATC
GCTGAGTCATCTCTTTAGTCTTATAGCTTCTTCAATATTTTTGATGTTTT
TGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_e07.b1 MSMg01no128_e07.b1 CHROMAT_FILE:
MSMg01no128_e07.b1 PHD_FILE: MSMg01no128_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:18 2005
         (365 letters)



>mm_chr11_114265074_114265845
          Length = 772

 Score =  605 bits (313), Expect = e-177
 Identities = 352/369 (95%), Gaps = 11/369 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcattcactcacca-ttcacctttatccagac-caaattcacacacagccatgcta 63
           |||||||||||||||  | ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 206 gaattcattcactcagaaattcacctttatccagacacaaattcacacacagccatgcta 265

                                                                       
Query: 64  gggaccttcctgggacctctgcttgga----gggcagcagccccaggagttccctctgtg 119
           |||||||||||||||||||||||||||    |  ||||||||||||||||||||||||||
Sbjct: 266 gggaccttcctgggacctctgcttggaccttg--cagcagccccaggagttccctctgtg 323

                                                                       
Query: 120 ggcccggcagaccatgtttgtgacaagccatggccttgactgccatgatctgcctccccg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggcccggcagaccatgtttgtgacaagccatggccttgactgccatgatctgcctccccg 383

                                                                       
Query: 180 tattagtgttcccagatgaatgagagaaagaaaactagaaattgtccaaaaagatccaga 239
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 tattagtgttcccagaggaatgagaaaaagaaaactagaaattgtccaaaaagatccaga 443

                                                                       
Query: 240 actctctagaatgttccagaaatctacaggcttgtata---actcagcagtgctatacca 296
           ||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||
Sbjct: 444 actctctagaatgttccagaaatctacaggcttgtatagtaacacagcagtgctatacca 503

                                                                       
Query: 297 gtgctatggttggagcatggctgtctgactagataaacttggcactctgttttatggagt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgctatggttggagcatggctgtctgactagataaacttggcactctgttttatggagt 563

                    
Query: 357 ctggaacct 365
           |||| ||||
Sbjct: 564 ctgggacct 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 772
Length adjustment: 9
Effective length of query: 356
Effective length of database: 763
Effective search space:   271628
Effective search space used:   271628
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)