BAC Information

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BAC

Clone NameMSMg01-128H11
Chromosome11 (Build37)
Map Location 30,421,102 - 30,421,287
singlet/doubletsinglet
Overlap geneAcyp2
Upstream geneMtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik
Downstream geneLOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128H11.T7 (MSMg01no128_h11.b1)MSMg01-128H11.TJ (MSMg01no128_h11.g1)
ACCAG336727AG336728
length721707
length of high quality
(start - end)
186 (72 - 257)286 (70 - 355)
definitionCHROMAT_FILE: MSMg01no128_h11.b1 PHD_FILE: MSMg01no128_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:34 2005CHROMAT_FILE: MSMg01no128_h11.g1 PHD_FILE: MSMg01no128_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCTCTAATTTCCCTTAACTGTCCTTAATATTATTTTAAAGTTCTCTGT
AAGATAGTACATGAATAAGAACACAGAACTTCCTCTCCTAAATAACTTGA
TTTTACTAAGTACTCTAATCAAATGTGCTTTGAAATGATCCAGCTCTACT
AGATGAGCTTAATGTAGCCACTCTCCCTGTATTTACTAAGGTAAGGCTTT
TTGTAAATCCTGGTGATGCATGCTTGCGACTGCAGCACTTAACAGGTGGA
AACAAGAGAATCAGAAATTTATCCTTAGCTTCATAGTCAGTTCCATGCCA
TCCGAGGATAATTGCAGCCCTGTCACAGAACTAACAAAATATAGATACAG
TATCATGGGCCCCCACATGGATAATTCTCTGCAGCTGTTAACTTTGAAAA
AAGAACACGGCGCCTGCATAGACGCCTCAGCGGCTAATAGCATTGACTGT
TCTTCCTGAGGTCCCGAATTCAAATCCCCACATTCTCTTGTTGTCTCACA
ATTCTCCGAAATGTTATCTGATGCCTTTCTTCTCCGGCGCTTCATTATTG
CTGTTTTTATTTTTATGTTCCCCTTTTATTATAAACATTTTTTTCCCCCC
CCCCCCCCCCCTTATCTCACTACAACTCATCCCTTATTACACTTCCATTC
TCCCTATATTATCTTACCACC
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATCACCAGGTTTATATCTAATTGAATTCTTG
GCCAAAGGAATCCACCCCGAACACCAAACAACTCAAGCTGTTGCTGAGGC
TATTAATAGCTCCCCACAAATTCATGTTAAATCCCTATTGCTGAAAACAA
TACCTATATAACTCATTGAACATAGAGATGTAGAACCGGTACCTACCTGG
AGCCTTCACCCATATGGACTAATGTTCATGGGACTGAAAGGTACTCTTTT
TGCTACCAAAGGAGAAAGGTAAAACCAACCCCATTGTGAGAGTGACTTGC
TGTAATATGCACTGCCGCAATAGTGCACAAAGGTTATGGGAGTAACCAAC
CAACACCCGATCTGAGTTAAGACTCATTCCATGAGATACAACCCATAACC
AATGCTGCTTAAGTGGCCAAGAACCTGACACTAAATAGGGCAGACCCCTA
TGGGGAAACAGCTGCTACTGTTCTGCTAAACTCTCAAATTTCTTGATGCT
TTGACTCTTTAAGGCAGTTCCTCATGTTGTGGTGAACTCAATCCCCAAAT
TATTTTCATTGATTTTTCTTAACCGTTATTTTTATGACTCATTTTGTGAG
CACTTTTGGAGAACCTCCCCAAAGGATCCTGACCCCCTATTTTAACCCCC
CTTGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_h11.b1 MSMg01no128_h11.b1 CHROMAT_FILE:
MSMg01no128_h11.b1 PHD_FILE: MSMg01no128_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:34 2005
         (186 letters)



>mm_chr11_30420902_30421487
          Length = 586

 Score =  344 bits (178), Expect = 2e-99
 Identities = 184/186 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtccttaatattattttaaagttctctgtaagatagtacatgaataagaacacagaactt 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 386 gtccttaatattattttaaagttctctgtaagatagtacatgaagaagaaaacagaactt 327

                                                                       
Query: 61  cctctcctaaataacttgattttactaagtactctaatcaaatgtgctttgaaatgatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cctctcctaaataacttgattttactaagtactctaatcaaatgtgctttgaaatgatcc 267

                                                                       
Query: 121 agctctactagatgagcttaatgtagccactctccctgtatttactaaggtaaggctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agctctactagatgagcttaatgtagccactctccctgtatttactaaggtaaggctttt 207

                 
Query: 181 tgtaaa 186
           ||||||
Sbjct: 206 tgtaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)