BAC Information

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BAC

Clone NameMSMg01-128L10
Chromosome11 (Build37)
Map Location 30,760,727 - 30,760,968
singlet/doubletsinglet
Overlap genePsme4
Upstream geneC230094A16Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243
Downstream geneGpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128L10.T7 (MSMg01no128_l10.b1)MSMg01-128L10.TJ (MSMg01no128_l10.g1)
ACCAG336911AG336912
length700732
length of high quality
(start - end)
242 (50 - 291)427 (77 - 503)
definitionCHROMAT_FILE: MSMg01no128_l10.b1 PHD_FILE: MSMg01no128_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:54 2005CHROMAT_FILE: MSMg01no128_l10.g1 PHD_FILE: MSMg01no128_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATTTCTGAGGAGCCGCGGAATTCATTAGACTTTCATAAAAACTC
ACAGAGACCTGAGTACTAGGGTTTAGAACTAGCTACTGTCAAGTATTCCT
TATTGTGAGTGTAACAATGTTTCATGTATGGTGATATCATTCTAGATTAT
ATATTTTTAAGATGACATAAGGGAATATCTATGAGGCTTGCGTCAGATAT
TTTAGTTGATAGAAAGGGACAGCAGGAAGCATAAAGAAGATTATCCATGA
GTATATCATTGTTTAAGAAGTGATTGAGCCGGGCGTGGTGGTGCACGTCN
TTGATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGCTCGAGG
CCAGCCTGGTCTACAAAGTGAGGTCCAGGACAGCCAGGGCTACACAGAAA
AACCCTGTCTCGAATAACCAAAAAAAACTACCAAATGAAGAAGTGATTGA
ATTATAAGGTGTTCGTTGTATTCTTATGCATATATTTGCAATTTTCCATA
TAAGTCGTTATAAGTAAAAATGCGATTTTGCTTTACGCTTTCATTTTGAG
ACAGTCTCTCTTTAGTCGTGATTGGTCTCAGATTAACTGTAGCCCATGCT
GGCCTCCTAGGTGCTGGTATTTCTGTCCTGTATTATGTTGTATATGGCAA
TCCTTTAGCTTTGTTTTATAGATCGCCTCCGCGTACATGCCTATAGTCAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAACAATAGATAAAGCATTCTG
TGAGTCCACAGATGGTGGTTTTGGCAGAAGCATTACATGCAGGAAAGGTA
AATCCATAACCAGAATAAGTATCTACTCCAGTAAGAACAAATGTCCTTTC
CATGGAGGAAGTGGTCCACTGTAGTCAAACTGCCACCGGGTGGGTTCATG
TGCCCATTGAGCAATGACAGGGATGCTTGGGGAAAGAGGCTGACTGTCCA
CAGAACGGGTCATCTTATCCACTTGATTATTGAACTCTTCCTCAGCTGGT
CATCTTTTGGTGAGCATTTACATGAAACACAAATATTGTCACATCCTTTG
CCAACTTGGAGAGATCTATCCACATACTTCTGTGCCAGATGTCTTTCTCA
CCAATTTTCCAACCATGATCTTTCAAAGTCCCTGACCATCCATCCAATCC
ACTGGCTATAGCCCATGAGTCAGTGAACAATCATACATCTGGCCATTGCT
TCTTCCAAACAAACTGTAATACCATGTGTAATGCCAGAAGTTCTTCCCAT
TTTGAAGATTTTCCTTCACCTGTATATTTCAGTGTTGTCTCAGAAAGGGG
CTGTAATGCTGCAGCTGTCCACTTCTAGATGTTGCCTGCATAATGTGCCG
AATCATCATTAAACCAGGCTCCAGTCTTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_l10.b1 MSMg01no128_l10.b1 CHROMAT_FILE:
MSMg01no128_l10.b1 PHD_FILE: MSMg01no128_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:54 2005
         (242 letters)



>mm_chr11_30760527_30761168
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagagacctgagtactagggtttagaactagctactgtcaagtattccttattgtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 cacagagacctgagtactagggtttagaactagctactgtcaagtattttttattgtgag 260

                                                                       
Query: 61  tgtaacaatgtttcatgtatggtgatatcattctagattatatatttttaagatgacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaacaatgtttcatgtatggtgatatcattctagattatatatttttaagatgacata 320

                                                                       
Query: 121 agggaatatctatgaggcttgcgtcagatattttagttgatagaaagggacagcaggaag 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggaatatctatgaggcttgtgtcagatattttagttgatagaaagggacagcaggaag 380

                                                                       
Query: 181 cataaagaagattatccatgagtatatcattgtttaagaagtgattgagccgggcgtggt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaaagaagattatccatgagtatatcattgtttaagaagtgattgagccgggcgtggt 440

             
Query: 241 gg 242
           ||
Sbjct: 441 gg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)