BAC Information

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BAC

Clone NameMSMg01-128N12
Chromosome11 (Build37)
Map Location 41,946,134 - 41,946,402
singlet/doubletsinglet
Overlap geneGabra1
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292, Gabrg2
Downstream geneGabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128N12.T7 (MSMg01no128_n12.b1)MSMg01-128N12.TJ (MSMg01no128_n12.g1)
ACCAG337009AG337010
length722801
length of high quality
(start - end)
273 (46 - 318)265 (77 - 341)
definitionCHROMAT_FILE: MSMg01no128_n12.b1 PHD_FILE: MSMg01no128_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:04 2005CHROMAT_FILE: MSMg01no128_n12.g1 PHD_FILE: MSMg01no128_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGGGTTCACGGGCTATCTGGGAATAAGAGTAAAAAGGATAGTTT
TTAACTTATTCCATTCTTTTATTTATTTCAGCTTCTATCAAGTAAACATC
TGTGTTAGGCTGGCTGATCTCTATAGAGTCTACTGGTAAAAGTTCAGATG
ACAGCAGTGTAACCCATTGAAAGGGTTTCCCCCACACTGGATTCAGAATG
CTACAGTGATAGCCCCACCTTGCCCTATTTGTTAGGCTTTCTTACATTCT
AAAATAGCATTTAACAACATTATATTACATAGCGAAATTTAAAAAGAGAA
AGCCTAGGGAATTTTTAATTTGACAAACAAAACATTAAATCTATATATCA
GCTTCAACATTGACGAATAAAAACATAAGCACACTATATCATTTGTGCAA
TAAAGACATATGTTTAAAGCTCATTAAACATTTGTTATTTGCCCTTCTAA
ACACTTTCACACAAAAATATCTTTGACGCATATATTTTTTTAGAATATTT
GGAAATATATATCTACAAGTGACTCTGCGGTTACAGTTAAGCTCTGGTTT
TTGCTACTTTTTCTCCTATCTTTGGACCTTCTTACCCTCTCTCTTCCTCT
TGTCTGTCTTCGTCTGACATGTCTTTGCTCCCTGGCTTCCTCTCAGAATC
CTGTCCCCGAGCTGATTACTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGAAGTTATCAGATACCCTGA
ACCTAAAGTTACAGATGGCTATGAGCCACCATATGAGTGCTAGGTATTAA
ACCTGAACACTGTGCAAGAGCAACAAGTGCTTTTATCTAAGCCATCGCTC
CAGCCTTCAAATTCTTATTTCCATGCTTTAAGAAATTTCAGGTCTAAATA
GTATTTCCCTTATTAATTAATCATACATATGTATGTTTATATATATATAT
ATATATATATATATATATATATATATATATATATATATCTAAATATGCTC
TTACTGATCAAAAGGTTATACCCCAAAATACCGCCCGGCACATACTTGTG
TTCTCACGACTTATGTTCCCACCCCCATCTATTTTGTTCGACTAGGACCC
GTCTATTATGACCACCTATTCTCTGTAGATCCCTACCACCCGTTTACCTT
CCGATACATATCCCTTCTTCAACCATTACCCCCACTCCCTTTCACTCCTT
TTTTTTGACCCCTACTCCCACTACCCCCTTTTTATATTTCCTCTCTACTC
TCTCCTCCTCCCTATTTCCCAACCTGCTCTCCTTTTATAGATTTGCGTAT
TTCTCCACTTCCTTGTCCCTCCTTTTATTTTCTCACGCACCACCCACTCT
CATTTTTTATGTTCTTCCTGAATCCCCACTTTCCTCTTATCTCTATTCTT
CTCTTCTCCCCTTTCCCCATTCCCCCCTTGACCCATATCTTATTTCCCTT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_n12.b1 MSMg01no128_n12.b1 CHROMAT_FILE:
MSMg01no128_n12.b1 PHD_FILE: MSMg01no128_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:04 2005
         (273 letters)



>mm_chr11_41945930_41946602
          Length = 673

 Score =  474 bits (245), Expect = e-138
 Identities = 263/269 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgggttcacgggctatctgggaataagagtaaaaaggatagtttttaacttat 64
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcttgggtgaatgggctatctgggaataagagtaaaaaggatagtttttaaattat 264

                                                                       
Query: 65  tccattcttttatttatttcagcttctatcaagtaaacatctgtgttaggctggctgatc 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccattcttttatttatttcagattctatcaagtaaacatctgtgttaggctggctgatc 324

                                                                       
Query: 125 tctatagagtctactggtaaaagttcagatgacagcagtgtaacccattgaaagggtttc 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tctatagagtctactggtaaaagttcagatgacagcagtgtagcccattgaaagggtttc 384

                                                                       
Query: 185 ccccacactggattcagaatgctacagtgatagccccaccttgccctatttgttaggctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccccacactggattcagaatgctacagtgatagccccaccttgccctatttgttaggctt 444

                                        
Query: 245 tcttacattctaaaatagcatttaacaac 273
           |||||||||||||||||||||||||||||
Sbjct: 445 tcttacattctaaaatagcatttaacaac 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)