Query= MSMg01no128_p15.b1 MSMg01no128_p15.b1 CHROMAT_FILE:
MSMg01no128_p15.b1 PHD_FILE: MSMg01no128_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:14 2005
(567 letters)
>mm_chr11_115460165_115461131
Length = 967
Score = 1060 bits (548), Expect = 0.0
Identities = 563/568 (99%), Gaps = 2/568 (0%)
Strand = Plus / Plus
Query: 1 catctatacagagaaactctcttgaaaaaa-caaaacaaaacaacaaaaaagaagatgga 59
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 200 catctacacagagaaactctcttgaaaaaaacaaaacaaaacaacaaaaaagaagatgga 259
Query: 60 tcattttattcagcagagcccatttgtcaagaaatggttgactggctgggtgtggtggca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcattttattcagcagagcccatttgtcaagaaatggttgactggctgggtgtggtggca 319
Query: 120 cacgcacacttttaatcccagtacctgggatacagaagctggtggatctctggagttcaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cacgcacacttttaatcccagtacctgggatacagaagctggtggatctctggagttcaa 379
Query: 180 ggccagcctggtctacaaagcaagttccaggacagccagggctagagatagagaaaccca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggccagcctggtctacaaagcaagttccaggacagccagggctagagatagagaaaccca 439
Query: 240 gttttgaaaaacaaacaacagacaataacaaaaagaaaaagaaaaaagggaagaagacac 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 440 gttttgaaaaacaaacaacagacaataacaaaaaggaaaagaaaaaagggaagaagacac 499
Query: 300 tgagagaccggccccacacccagtgcttctttctttaactgtcacaagacttacactgtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgagagaccggccccacacccagtgcttctttctttaactgtcacaagacttacactgtg 559
Query: 360 gacaacgggaaaccatcttcccaaaagagtaacgtgaggattctttccacaaaacaagtc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gacaacgggaaaccatcttcccaaaagagtaacgtgaggattctttccacaaaacaagtc 619
Query: 420 tggaaagaaagctctcttctcaagctcgctcagcttcttttttttttttttttaaaagat 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 620 tggaaagaaagctctcttctcaagctcgctcagcttcttttttttttttttt-aaaagat 678
Query: 480 ttatttatttattatatgtaagtacactgtagctgtcctcagatactccagaagagggca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttatttatttattatatgtaagtacactgtagctgtcctcagatactccagaagagggca 738
Query: 540 tcagatttcgttatagatggttgtgagc 567
|||||||||||||| |||||||||||||
Sbjct: 739 tcagatttcgttatggatggttgtgagc 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_p15.g1 MSMg01no128_p15.g1 CHROMAT_FILE:
MSMg01no128_p15.g1 PHD_FILE: MSMg01no128_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:14 2005
(289 letters)
>mm_chr11_115533734_115534422
Length = 689
Score = 484 bits (250), Expect = e-141
Identities = 279/294 (94%), Gaps = 10/294 (3%)
Strand = Plus / Minus
Query: 1 aaagccagtctggactacagagtgactgtctcaaaaaagc---------aaaaagacaca 51
|||||||||||||||||||||||||||||||||||||||| ||||| | | |
Sbjct: 459 aaagccagtctggactacagagtgactgtctcaaaaaagcaaaaaaaaaaaaaaaaaaaa 400
Query: 52 aaaaaaaagaaggaaagagaaaagaaaacccaacaaagtcaagttctctggccagcttgt 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aaaaaaaagaaggaaagagaaaagaaaacccaacaaagtcaagttctctggccagcttgt 340
Query: 112 tcacctcattgctccctctttgaacggcacagccattctttgatcctggcccttagcagc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tcacctcattgctccctctttgaacggcacagccattctttgatcctggcccttagcagc 280
Query: 172 ttagtctgttttctcctttttttttttttttaatgtttatttttatgtgtgtaggtgttt 231
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 279 ttagtctgttttctcc-ttttttttttttttaatgtttatttttatgtgtgtaggcgttt 221
Query: 232 gcctgcatatatacatgccatgccttgtacccaaggaaaccagaagaggctgtg 285
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 220 gcctgcatatatacatgccatgccttgtgcccaaggaaaccagaagaggctgtg 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
