BAC Information

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BAC

Clone NameMSMg01-128P17
Chromosome11 (Build37)
Map Location 50,273,896 - 50,274,368
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128P17.T7 (MSMg01no128_p17.b1)MSMg01-128P17.TJ (MSMg01no128_p17.g1)
ACCAG337113AG337114
length701700
length of high quality
(start - end)
513 (70 - 582)286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no128_p17.b1 PHD_FILE: MSMg01no128_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:15 2005CHROMAT_FILE: MSMg01no128_p17.g1 PHD_FILE: MSMg01no128_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAGGCTTCCGCCAACACCACAATTCACAGACAAAAATCTCTC
CTTAATTAGGGGACCCTTAGATTACCTATCTATCTATCTATCTATCTATC
TATCTATCTATCTATCTATCTATCTACCTATCTATCTATCTATCTATCTA
TCTACCTATCTATCTATCTATCTATCTATGAGACAGGGTCTCACTGTCTC
ACTAACAGGGTCTAGCCTTGGCTGGGCTAGAACTTGCTATATAGACCAGG
CTGACTTGGAACTGCCTCTGCCCTCGAAGCACTGGGACTGAAGGTGTGCA
CCACCACCACGCTCTGTGCCACGAACCTGATTTTATCTGTAGCTATGCAA
ATTAGTTATTTCCCCCCTATGGAAGGGATTCTAGGTGCCCTGTTGGAGGC
AGACCCTGGATTTTTCAAAGATGTCTACATCCTAGTCCCTGTAACCTTCC
GCCCTGCAGGCCAAAGAGGCTTCTGTGTGATGCGCTGATGCTAATGATCT
GGACAGGGGAAGTTTTCCTAGATCATCAGAGGAAGGCCCCGTGACGTCTC
TTAAGGTCTTACCAGGGGGAGGCATGGCTACGGAAGCAGACGGCGTAATG
ATGCAGGGTCAGGGGTCTAGAAATAAAGGCAGCTGCTAGGTATAAAGAAA
A
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGCTCACCATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCA
GTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGC
AATACCTCTTCTGGCCATATCCCCAGAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACCATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTCCTAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_p17.b1 MSMg01no128_p17.b1 CHROMAT_FILE:
MSMg01no128_p17.b1 PHD_FILE: MSMg01no128_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:15 2005
         (513 letters)



>mm_chr11_50273656_50274568
          Length = 913

 Score =  783 bits (405), Expect = 0.0
 Identities = 467/513 (91%), Gaps = 40/513 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacaccacaattcacagacaaaaatctctccttaattaggggacccttagattacctat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 241 caacaccacaattcacagacaaaaatctctccttaattaggggacccttagat------- 293

                                                                       
Query: 61  ctatctatctatctatctatctatctatctatctatctatctatctacctatctatctat 120
            |||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 294 -tatctatctatctatctatctatctatctatctatctatctatctac------------ 340

                                                                       
Query: 121 ctatctatctatctacctatctatctatctatctatctatgagacagggtctcactgtct 180
                               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 --------------------ctatctatctatctatctatgagacagggtctcactgtct 380

                                                                       
Query: 181 cactaacagggtctagccttggctgggctagaacttgctatatagaccaggctgacttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactaacagggtctagccttggctgggctagaacttgctatatagaccaggctgacttgg 440

                                                                       
Query: 241 aactgcctctgccctcgaagcactgggactgaaggtgtgcaccaccaccacgctctgtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactgcctctgccctcgaagcactgggactgaaggtgtgcaccaccaccacgctctgtgc 500

                                                                       
Query: 301 cacgaacctgattttatctgtagctatgcaaattagttatttcccccctatggaagggat 360
           |||||| |||||| ||||||||||||||||||||||||||||   | |||||||||||||
Sbjct: 501 cacgaagctgattatatctgtagctatgcaaattagttattttttctctatggaagggat 560

                                                                       
Query: 361 tctaggtgccctgttggaggcagaccctggatttttcaaagatgtctacatcctagtccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctaggtgccctgttggaggcagaccctggatttttcaaagatgtctacatcctagtccc 620

                                                                       
Query: 421 tgtaaccttccgccctgcaggccaaagaggcttctgtgtgatgcgctgatgctaatgatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtaaccttccgccctgcaggccaaagaggcttctgtgtgatgcgctgatgctaatgatc 680

                                            
Query: 481 tggacaggggaagttttcctagatcatcagagg 513
           |||||||||||||||||||||||||||||||||
Sbjct: 681 tggacaggggaagttttcctagatcatcagagg 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)