BAC Information

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BAC

Clone NameMSMg01-130B21
Chromosome11 (Build37)
Map Location 5,351,870 - 5,352,279
singlet/doubletsinglet
Overlap genenone
Upstream geneMtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016
Downstream geneLOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130B21.T7 (MSMg01no130_b21.b1)MSMg01-130B21.TJ (MSMg01no130_b21.g1)
ACCAG337952AG337953
length1,139707
length of high quality
(start - end)
410 (470 - 879)248 (64 - 311)
definitionCHROMAT_FILE: MSMg01no130_b21.b1 PHD_FILE: MSMg01no130_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:46 2005CHROMAT_FILE: MSMg01no130_b21.g1 PHD_FILE: MSMg01no130_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCACTCTTNNNNAAACAGTGGGCGCTAAGACTACTAAGGGAGAGGAT
CCGCGGAATTCTGTTCTTAGNACCACGATAAAAAGCTTGNNANTANNTGN
NAACTTTAATTTAGACCTTTAAAAGTCCTCTTCTGGNCTCNATGGGAACT
GCACATACAAACTCATGTATGCATACATAAAATTTAACCTAAAAATAAAA
ATAAATGAAGAAAGACAGTTGCTGCCTTGCCTTTCAAAGCTTTGCTGATC
CTGCCTCAGGCTAAAGTGCAGCAGAGATCAAAGAAACTCCTGTTCTTTTT
CCCCTCCACGACTAACAAGCTGTGTGACCAAGGCTCTCCCTCTCTGAGCT
TGGGTGTTCTTGCCTGGAAATGCATCTGTGATCCTTGCCTTACTTCAGAG
GGTTTTTGTGAGGATTCCATGAGCTGGCAGCTGGGCATTCTTGATGAGAG
AGCTCTTATCATACCGCACACTCTAACTGGCTGTATGATCTGATCCTATA
GCAAGCACCTGGCCCTGAGACTTGGCAGTAGAAGATGCTTGCTAGACATG
TGCTTTGGCTCAGGGTACACACTTCTTCCCAGCTGTGAACCCTCGGTGTG
GGAGATGTGGTTCACACCCCTGTTTGTTTCTTCCACGAGTTAATGATTTA
CTGCCAGTGTTTAATTTTGTTTAAACAGACACGACCCCATTGGTACCCAA
GGCTCTGTCCCGGGCCAAAGTGGCTCAGAGATCAAAGACACCCAAAGACG
CAGGAGCCCTCCCACTGCCCTCTCCTGGAATTGTCCTTTAGCCTGCTGGC
ACCTATGATTGCCCTGCTGCCCCTTGACCTTGCATGTAGCCATGTGCCCT
TCTCTTTGAGATCAGCTGGCTTCCCTTGGGGCCACCAGGAAACCACGCAC
CCTCCAGATTTCCAGGGCCGTCTCCTTCATCATTCCCTCATTCTTTCTTC
CAAGAAAACACTGCAATACCAAAGGCCTTGCCCCAGCCCACCTAAAGCCT
CTTGCTCTTGGCTGCCCTGTGTTCTCAAGCCTCCCTGGAACCCTTCTTTC
CTCCTCTCTCCCGGAAAAAAAACCTGGGAGGGGCCCCAAAAAAAATATTT
TTTCTTTTAAAAAACAAAAAAAAATTTTGTTTTCATTTT
CATGAAGTGGTAGCCTGGCGGCGCCTGTTTCAAAACGGGGGTGAACTATA
GAAGTACCACAAAATTCTATCCCAGGTGGTTCCTGTTAGACCTTCTGTGT
TTGCATTCCTCTGTCCTATGTAAGAATCCAGTAACCTCTTTGTACCTTGC
TGGTGTGTCACCCAATTTCCCTATTCTGTATAAAAAGTTTGATGCTCGAT
TTGACAAATTACATTCAGATTCTACACAACCTCTCCTGTGTGCATCTGTC
TGTCATCCCATCCAACGCTTTGCCCACCTGTGACTAGAGACCCGTTCCAT
GCAGACAAAGGTTTTCTATAGGGTCTGCGGCATCCTACTACCTCTGATAG
GTGGGTGGTGGGCAACAAAGGAGGTTAAAGTGTTTAAAAACCATCATTAA
AAATAAGGCCCGAAAAAATTAAAGTTACACATAGGTCTTGGGTATGGACC
TGGCCAGTATCCATGTTCCTGAACACTATTTAATAAAGGCTGCTTCAAAT
TTGGCTCAAAAATTGTGGTAGTAGTCTTAGAGCAGGGACTCTCTATTGCC
ATTGGTGTATGGGCAATTCTCCATTCTTTGACTGAGGTGGAAGGTCCTGG
TAGTGTCACGTGATACAGACTCACACCGTATTTTGCCGAGGCAAGACCAG
TGGGAAGACACGTGATGTTTGGAGAGTATGGCTAGGACTCAACGCACAGT
GACTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_b21.b1 MSMg01no130_b21.b1 CHROMAT_FILE:
MSMg01no130_b21.b1 PHD_FILE: MSMg01no130_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:46 2005
         (410 letters)



>mm_chr11_5351670_5352479
          Length = 810

 Score =  770 bits (398), Expect = 0.0
 Identities = 407/410 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctaactggctgtatgatctgatcctatagcaagcacctggccctgagacttggcagt 60
           |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctacctggctgtatgatctgttcctatagcaagcacctggccctgagacttggcagt 260

                                                                       
Query: 61  agaagatgcttgctagacatgtgctttggctcagggtacacacttcttcccagctgtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagatgcttgctagacatgtgctttggctcagggtacacacttcttcccagctgtgaa 320

                                                                       
Query: 121 ccctcggtgtgggagatgtggttcacacccctgtttgtttcttccacgagttaatgattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctcggtgtgggagatgtggttcacacccctgtttgtttcttccacgagttaatgattt 380

                                                                       
Query: 181 actgccagtgtttaattttgtttaaacagacacgaccccattggtacccaaggctctgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgccagtgtttaattttgtttaaacagacacgaccccattggtacccaaggctctgtc 440

                                                                       
Query: 241 ccgggccaaagtggctcagagatcaaagacacccaaagacgcaggagccctcccactgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgggccaaagtggctcagagatcaaagacacccaaagacgcaggagccctcccactgcc 500

                                                                       
Query: 301 ctctcctggaattgtcctttagcctgctggcacctatgattgccctgctgccccttgacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctcctggaattgtcctttagcctgctggcacctatgattgccctgctgccccttgacc 560

                                                             
Query: 361 ttgcatgtagccatgtgcccttctctttgagatcagctggcttcccttgg 410
           |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 ttgcatgtagccatgtgcccttctctttgagatcagttggcttcccttgg 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)