BAC Information

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BAC

Clone NameMSMg01-130G12
Chromosome11 (Build37)
Map Location 48,666,542 - 48,667,287
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7
Downstream geneIrgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130G12.T7 (MSMg01no130_g12.b1)MSMg01-130G12.TJ (MSMg01no130_g12.g1)
ACCAG338167AG338168
length7191,239
length of high quality
(start - end)
71 (43 - 113)728 (97 - 824)
definitionCHROMAT_FILE: MSMg01no130_g12.b1 PHD_FILE: MSMg01no130_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:11 2005CHROMAT_FILE: MSMg01no130_g12.g1 PHD_FILE: MSMg01no130_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCGCGGAAT
TCTCTGTCTCAACTGAACTAGATTGGCAATCTGGTGACAAGGGACTCTAC
TCTGTATTTCAGGCCTTTCCCCCGTGTTTAACTATTTTTTGCTATATATA
AATTACTCTTTTAATTTTTTAGGCTAATATTTTATTTTGTCAGGTGGCAG
TAGCACACTACTTTGATCCTAGCACTTGGGAGGCAAAGGCAGGCAGATCT
CTGAGTTTGAGACTAGCCTAATCTACAAAGTGAGTTTTAGGATAACCAGA
ACTACATAGAGAAACCCTGATTTGTAATCACAACAGAACATCAGGCTATC
ACCCCATTTTATCATTCTCCCCCCCCCCCACCAAGCAAATTTTATTCTCT
TGCTATCTATATCCACCCTTACAAAAAAAGAAAAATGACTTAGCCGTGGG
GGCTGTTGATCACATCATAGTTCTATGCCCGATCAGTGGACGCCATCTCG
TTTCTGGTATTCTGTGCCACCTAGGTAATTACTCTGCAAACGGCACAGTT
CGCGCTCGAGAACCGCACAGCTTCTGGGACGGGTGGAAGTTTTTAGCCTC
TGACGCTGTTTTTTGTCCTCCCTTTTGATCCCTGGTTACCATATGTTCCT
CACGATCTCCGTTTGCCTGCTTTGTTACGCATCCCCCTCCCTTCCAACAC
TGTTCGCATTTTTTTTTCG
CAATCTCTTTTNTAAACATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGGCTGGGTTGNGGNTTCAT
GAGAAGCAAAAGAACCCTTCCAGAAACACAGTTCCCCCATTTCCTCTTCA
CGTTCTGGTCCTGGACTATAATGGTGAAAAAGTAACCTTAAGGCCCCAGC
GAGATTTGAACTCGCGACCCCTGGTTTACAAGACCAGTGCTCTAACCCCT
GAGCTATGGAGCCAGTCACAAATGTGGCTCTTGTGCACGAGTAGTTAACA
GGATCACAATCGTTGCGCAGCCGCAGACTCTAACGCCAAATTGGAAAAAT
GATAAAATCTAATTTTAGTCTTTCAACCGAGTAGCGGCAGCAGCCGACAG
GATTTTTTTATCCACCGAGACAGATAAAACAGAAGGAACGTGAGTATTCG
GAAAGAGACTTTTAAAAAACTGGTCCGAGTTGTACCTGCCGTGTGAGCGA
GGGAACGGTCCCTACGAGGAGTGCCCTGGTCTGCCGAAGGAACAGGGAAC
GATGTTGTAATCAACGATTACAATCACGGCTTATAATCAAGGTCAACATT
CAGACAATGCTCACGGGAAGGAATCGATGACCCTGTCCTGTGAGAGGCCA
AGTCAGAAATATTGATTACCTGGTGGTGACAGTAGTGGTCGGGTTCTGCA
GACGTGCTCAGTAGAGAGCAGCGCAAAGACCTAGAATCCCCTGGTCCCAC
CATACTCACAGGCAAATTTGAAAAGGACAACCAACTCTTATGATGCATCT
TAATGCTAGCAGTGAGCTAATTTGTGATGGCCCCTCAGAGCCCCCTGAGG
TGAGGTCAGAGAAGATGAAGGTTTGGTGGAGGACAAGAGTCCTAATCTGA
CAGAATAACAAGAAGTGTCGGCAGTCCATAGCCCTTCTGCCTGGTGTCTA
ACCGGCCCTAAGGTTTCTGTAAAGCTTGAAGAGGCCTGGCTTCCTCTTTG
GACAACCCAGGGGGCTTGCCCTTCATTTGAGGGTTGGAATTTCTGGAAAA
AAAAAGTTTAAAATCCCTGTGTATTTAACGTCCTAAACCACTTTTTTTCC
CTAAAACCTGATAATGTGGGGAATCTTTTATAAGGCCCAAAATGGTGAAA
AGGGTGGGGTCACCTATNCTCTATATAATTGTGTTGAGCTAGATTCCTAA
TATTTTCCTCGTTACCTCATAAATTTGTACTGTCAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_g12.g1 MSMg01no130_g12.g1 CHROMAT_FILE:
MSMg01no130_g12.g1 PHD_FILE: MSMg01no130_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:11 2005
         (728 letters)



>mm_chr11_48666295_48667422
          Length = 1128

 Score = 1274 bits (659), Expect = 0.0
 Identities = 716/753 (95%), Gaps = 32/753 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgagaagcaaaagaac---ccttccagaaacacagttcccccatttcctcttcacgt 57
           |||||||||||||||||||   |   ||||||||||||||||  ||||||||||||| ||
Sbjct: 993 tcatgagaagcaaaagaacagac---ccagaaacacagttccagcatttcctcttcatgt 937

                                                                       
Query: 58  tctggtcctggactataatggtgaaaaagtaaccttaaggccccagcgagatttgaactc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tctggtcctggactataatggtgaaaaagtaaccttaaggccccagcgagatttgaactc 877

                                                                       
Query: 118 gcgacccctggtttacaagaccagtgctctaacccctgagctatggagccagtcacaaat 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gcgacccctggtttacaagaccagtgctctaacccctgagctatggagccagtcacaaat 817

                                                                       
Query: 178 gtggctcttgtgcacgagtagttaacaggatcacaatcgttgcgcagccgcagactctaa 237
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 816 gtggctcttgtgcacgagtagttaacagaatcacaatcgttgcgcagccgcagactctaa 757

                                                                       
Query: 238 cgccaaattggaaaaatgataaaatctaattttagtctttcaaccgagtagcggcagcag 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 cgccaaattggaaaaatgataaaatctaattttagtctttcaaccgagtagcggcagcag 697

                                                                       
Query: 298 ccgacaggatttttt----tatccaccgagacagataaaacagaaggaacgtgagtattc 353
           |||||||||    ||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ccgacagga----ttacactatccaccgagacagataaaacagaaggaacgtgagtattc 641

                                                                       
Query: 354 ggaaagagacttttaaaaaactggtccgagttgtacctgccgtgtgagcgagggaacggt 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ggaaagagacttttaaaaaactggtccgagttgtacctgccgtgtgagcgagggaacggt 581

                                                                       
Query: 414 ccctacgaggagtgccctggtctgccgaaggaacagggaacgatgttgtaatcaacgatt 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ccctacgaggagtgccctggtctgccgaaggaacagggaacgatgttgtaatcaacgatt 521

                                                                       
Query: 474 acaatcacggcttataatcaaggtcaacattcagacaatgctcacgggaaggaatcgatg 533
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 acaatcaaggcttataatcaaggtcaacattcagacaatgctcacgggaaggaatcgatg 461

                                                                       
Query: 534 accctgtcctgtgagaggccaagtcagaaatattgattacctggtggtgacagtagtggt 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 accctgtcctgtgagaggccaagtcagaaatattgattacctggtggtgacagtagtggt 401

                                                                       
Query: 594 cgggttctgcagacgtgctcagtagagagcagc------------------gcaaagacc 635
           |||||||||||||||||||||||||||||||||                  |||||||||
Sbjct: 400 cgggttctgcagacgtgctcagtagagagcagcagacgtgctcagtagagagcaaagacc 341

                                                                       
Query: 636 tagaatcccctggtcccaccatactcacaggcaaatttgaaaaggacaaccaactcttat 695
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tagaatcccctggtcccaccatactcacaggcaaatttgaaaaggacaaccaactcttat 281

                                            
Query: 696 gatgcatcttaatgctagcagtgagctaatttg 728
           |||||||||||||||||||||||||||||||||
Sbjct: 280 gatgcatcttaatgctagcagtgagctaatttg 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 728
Length of database: 1128
Length adjustment: 10
Effective length of query: 718
Effective length of database: 1118
Effective search space:   802724
Effective search space used:   802724
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)