BAC Information

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BAC

Clone NameMSMg01-131J24
Chromosome11 (Build37)
Map Location 73,857,754 - 73,858,299
singlet/doubletsinglet
Overlap geneOlfr139
Upstream gene1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398
Downstream geneOlfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131J24.T7 (MSMg01no131_j24.b1)MSMg01-131J24.TJ (MSMg01no131_j24.g1)
ACCAG339078AG339079
length718744
length of high quality
(start - end)
546 (78 - 623)586 (62 - 647)
definitionCHROMAT_FILE: MSMg01no131_j24.b1 PHD_FILE: MSMg01no131_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:55 2005CHROMAT_FILE: MSMg01no131_j24.g1 PHD_FILE: MSMg01no131_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAGAG
GCGCGGAATTCCTCCAACTTTCTACTTGAGCTTCCAGTATGAGAATGCCA
AGGACATATGTAAGGATGGCAGGACATTTTAATAGCCTTGTCCTGTCTTC
TCACACTGGATACCTCTTTCCTGTCAGCACCCTCTTCAGGGCACCCTGTA
CATCTGGGTTCCGGAGGCTGTAGATGAGTGGGTTTAACATAGGGCTGAGG
ATAGTATTGAGGATCCCAATGCCCTTGTCCTTGTCTGAGGCTGAGACAGA
ACCCAGACGCATGTAACTGAAGAAGCCATTTCTATAAAAGATACAGACCA
CAGTGAGGTGGGAGCCGCATGTGGAAAATGCCTTCTTCCTCCCCTCTGTG
GAGCGGATCCGTAGTACTGCAGCTGCAACGTGGGCATAGGACACTGAGAT
AAGTATCATGGGGACTACTCCCATGAAAGTGGCTCCCACAAAAAGCAGTT
GCCCATTGAGGTAGATGCTGGAGCAGGAGAGCTGGAAAAGAGGTGGAAGG
TCACAGTAGAAGTGGTTGACCACATTAGGGCCACAGAAATCCAGCACAGA
CACTGCCACTGTGTGAGTCAGAGCATTAATGAAGGAGACAGTACAGCCAA
TACCCACCAGTGTGCCCTGCACTTCACGGCTCATGCGGGTGCTGTTAGTG
AGGGGCTGGCAGATGGCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCGAATTCTCACCTGAGGAATACCGAATGGCTGAGAA
AAACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATTAAA
AATTCAGGTGACAGCAGATGCTGGCCAGGATGTGGAGAAATAGGAACACT
CCTCCATTGTTGGTGGGATTGCAAGCTTGTCCAACCACTCTGGAAATCAG
TGGTGGTTTCTCAGAAAATTGGACATATTTACTACTGGAGGATCCTGTAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACCGGTAAGAAGGAC
ACATGCTCCACTATGTTAATCGAAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATTTCCCTCAATAGAGGAATGGATACAGAAAATGTGGT
ACATTTATGCAATGGAGTACTACTCAGCTATTAAAAAGAACGAATTTATG
AAATTCCTAGGCAAATGGATGGACCTGGAGGCCATCATCTTGAGGTAGGT
AACACAATCACAAAAGAACTCAAGTGATATGTACTCACTGATAAGTGGAT
ATTAGCCCAGAAACTTAGTATACCCGAGATATAAGACACAATTCTAAAAC
ACATGAAACTGAAGAAGAACGAAGATCAAAGTGTGGACACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_j24.b1 MSMg01no131_j24.b1 CHROMAT_FILE:
MSMg01no131_j24.b1 PHD_FILE: MSMg01no131_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:55 2005
         (546 letters)



>mm_chr11_73857554_73858499
          Length = 946

 Score = 1040 bits (538), Expect = 0.0
 Identities = 544/546 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcttccagtatgagaatgccaaggacatatgtaaggatggcaggacattttaatagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcttccagtatgagaatgccaaggacatatgtaaggatggcaggacattttaatagcc 260

                                                                       
Query: 61  ttgtcctgtcttctcacactggatacctctttcctgtcagcaccctcttcagggcaccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcctgtcttctcacactggatacctctttcctgtcagcaccctcttcagggcaccct 320

                                                                       
Query: 121 gtacatctgggttccggaggctgtagatgagtgggtttaacatagggctgaggatagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtacatctgggttccggaggctgtagatgagtgggtttaacatagggctgaggatagtat 380

                                                                       
Query: 181 tgaggatcccaatgcccttgtccttgtctgaggctgagacagaacccagacgcatgtaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggatcccaatgcccttgtccttgtctgaggctgagacagaacccagacgcatgtaac 440

                                                                       
Query: 241 tgaagaagccatttctataaaagatacagaccacagtgaggtgggagccgcatgtggaaa 300
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaagaagccagttccataaaagatacagaccacagtgaggtgggagccgcatgtggaaa 500

                                                                       
Query: 301 atgccttcttcctcccctctgtggagcggatccgtagtactgcagctgcaacgtgggcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgccttcttcctcccctctgtggagcggatccgtagtactgcagctgcaacgtgggcat 560

                                                                       
Query: 361 aggacactgagataagtatcatggggactactcccatgaaagtggctcccacaaaaagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggacactgagataagtatcatggggactactcccatgaaagtggctcccacaaaaagca 620

                                                                       
Query: 421 gttgcccattgaggtagatgctggagcaggagagctggaaaagaggtggaaggtcacagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttgcccattgaggtagatgctggagcaggagagctggaaaagaggtggaaggtcacagt 680

                                                                       
Query: 481 agaagtggttgaccacattagggccacagaaatccagcacagacactgccactgtgtgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaagtggttgaccacattagggccacagaaatccagcacagacactgccactgtgtgag 740

                 
Query: 541 tcagag 546
           ||||||
Sbjct: 741 tcagag 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)