BAC Information

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BAC

Clone NameMSMg01-131K01
Chromosome11 (Build37)
Map Location 100,671,537 - 100,671,991
singlet/doubletsinglet
Overlap geneStat5b
Upstream geneLOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc
Downstream geneStat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131K01.T7 (MSMg01no131_k01.b1)MSMg01-131K01.TJ (MSMg01no131_k01.g1)
ACCAG339080AG339081
length721712
length of high quality
(start - end)		457 (71 - 527)464 (121 - 584)
definitionCHROMAT_FILE: MSMg01no131_k01.b1 PHD_FILE: MSMg01no131_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:55 2005CHROMAT_FILE: MSMg01no131_k01.g1 PHD_FILE: MSMg01no131_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAGCCGCG
GAATTCACAGAGTTCACCAGCCTCTGCCTCTCAAGTGCTGAGATCAAAGA
CCTGCAAATACACCACCAAGCCTGGCCCAAGAGAATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTCTATCTATATAGGT
ACTACACGTGAATCTGAGTTGAGAGGCATGGAAAAGGTGGCAGAGGGTTT
CTTCCTAGGCAGTCCTAAAATGAAGTGTATGATGTCAGTCTTTTTTTTTA
TTATTAGGTATTTATTTCATTTACATTTTCAATGCTATCCCAAAAGTCCC
CCACCCTCCCACACCCACTCCCCCACCCACCCACTCCCACCTCTTGGCCC
TGGCGTTCCCCTGTACTGAGGCATATAAGGTCTGCACGACCAACGGGCCT
CTCTTTCCACTGATGGCCGACTAGGCCATCTTCTGATACATATGCAGCTA
GAGACACGAGCTCTGGGGGGGAGGGGGGTGGCTGTCTTTCCCTTGCTATT
TTATTTTTTCTTTTTTGCTCTCGTGTTTATCTCTTTATTTCTTATACCTT
GCATGTTTTATATGCCCCTTGCCCGGCTAATCCATCACCTTACTTTTCTT
TTGCCCCCTTCCCCCCCTCGTCTCTTCCCGCTTTTCATTCTTTCCTTTTA
TATTCTTTTATACTCTTCCCC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCAGAAAAATGCAGGCCAGCGTGGGCTTCCTGTGACTCTTT
CTTAAAGAATTTTATTCAAACCAAAACAAGCTGCACCAACAAAAAACATG
CTTTAGAAAATGGCTTTCTGGGGGCTGGAGAGATGGCTCAGCAGTTAAGA
GCACTGACTATACTTCCAGAGGTCCTAAGTTCATGATAGCTCACAACCGT
CTGTCATGGGATCTAGTGTGTCTGAAGACAGCTACAGTGTATGCAAACAA
ACAAGCAAGCAAGCTTGTTAGCAAGCAAGCAAACAAACAAACAAACAAAT
AGATGCTTTCCGAAACTACTAGGAGCCCTTTCAGACAGACCTGAGAATTA
AGTGCATTTGGCAGAGACCTGGGATTCCCCAGAGTGGAGAAGCTATGTTA
ATAGGAACTTCAGACATTAAAACCAGACTTGCTGTAACACTGCTTTTGGT
AATACGGAACTGGGCGTCTTGAATCCAATCTGAAAATGACTTAGCTACTG
ATTTTCACAGTTCGCCTAAGGATTGTGTTACAGCCATGGTCCAGTGCACT
GGACCTGGGTTTTGTTGACTCCCAAAGACTGCACGCCCATGTGTGCCAGG
AACCAAAGATCTCTCTGTGAGCAGGGGTTGTCGGATCGAGTAACACTGAG
CTATTTATGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_k01.g1 MSMg01no131_k01.g1 CHROMAT_FILE:
MSMg01no131_k01.g1 PHD_FILE: MSMg01no131_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:55 2005
         (464 letters)



>mm_chr11_100671328_100672191
          Length = 864

 Score =  824 bits (426), Expect = 0.0
 Identities = 451/464 (97%), Gaps = 9/464 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaaacaagctgcaccaacaaaaaacatgctttagaaaatggctttctgggggctggag 60
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 210 ccaaaacaagctgcaccaacaaaaa-cacgctttagaaaatggctttctgggggctggag 268

                                                                       
Query: 61  agatggctcagcagttaagagcactgactatacttccagaggtcctaagttcatgatagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agatggctcagcagttaagagcactgactatacttccagaggtcctaagttcatgatagc 328

                                                                       
Query: 121 tcacaaccgtctgtcatgggatctagtgtgtctgaagacagctacagtgtatgcaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcacaaccgtctgtcatgggatctagtgtgtctgaagacagctacagtgtatgcaaacaa 388

                                                                       
Query: 181 acaagcaagcaagcttgttagcaagcaagcaaacaaacaaacaaacaaatagatgctttc 240
           ||||||||||||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acaagcaagcaagc--------aagcaagcaaacaaacaaacaaacaaatagatgctttc 440

                                                                       
Query: 241 cgaaactactaggagccctttcagacagacctgagaattaagtgcatttggcagagacct 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaactactaggagccctttcagacagacctgagaattaagtgcatttggcagagacct 500

                                                                       
Query: 301 gggattccccagagtggagaagctatgttaataggaacttcagacattaaaaccagactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggattccccagagtggagaagctatgttaataggaacttcagacattaaaaccagactt 560

                                                                       
Query: 361 gctgtaacactgcttttggtaatacggaactgggcgtcttgaatccaatctgaaaatgac 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 561 gctgtaacactgcttttggtaatacggatctgggcgtcttgaatccaatctcaaaatgac 620

                                                       
Query: 421 ttagctactgattttcacagttcgcctaaggattgtgttacagc 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagctactgattttcacagttcgcctaaggattgtgttacagc 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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