CAGXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAAAGAGGCGCGGAATT
CTAGAGGTTGCTAGAAATATGATCTACCTTCCTAGACAGGGGTGGTCCCC
AGCCAGGTCCCTAACCTGCCTCCCCCCCCCCCATTGGATTATCTATTAAA
AAGGGCAGGTCTCCTCCAAAAGATGGATTCCATTCTTTACAAGATGGAGC
AAACCTGGGCAGAGCCACTCCCATCTGTTCTGTACCCACGAGTCTGTGGT
GTGCAGAGATGCCTGAGCCTTGGCATAGAGGAGCAGGTGGCATGTCAACC
TTGGAACCAAGATACACTGCACATGAGCATACAGGGGCTCTGAGAAGGAC
ACAGGGGCAAGTGAAATCTCAGCCTTGCCAGGAGCCTTCCTGTAGTGTGG
GTTTGTANNNNNNCCANANAANAAAGANAACTTTGAANTACTATATAAAT
ATTCTTTTAACCCAAACTACCTATATTCAATGAATACATATATCCCATAC
CAAAACTTTTTTATCCCTTTTAAACATACCTCCATTTATTTCTCTCTTTA
ATGAACTGATCAGCGTATTATATCTTACCATCCTGTTATCATCCTGGTGG
GCCCTCAATAGATTACTAACCTTTGAGGGATTTTCCTGTAACTCCTATCC
TTTTGTTTTTGACCTGTTATTGTTTAATTTAATACACTTATAAACCTACT
GACCTCCTATTACTCTGAAT

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGTCCTGCCAGCTCTACTCTGCGGGAGTGG
AGGGCCTGAGGAAGAAGCCAATCTGCCCCTGGCTCACTGGGAGCTACCGA
CCGTTGGGGCTGGATTTTTGTGCTTGTGCCATGTGCCTCGGAGGAGAGGC
GACCGACCGACCCAGGCCCCCCTCTGACCCTTTTGCTCCTTAAAGTGGAG
CATCATACTGATCCAGGAACTCCCGAATGGGTCCAGGCAGCTGGGTCACT
TTCTCATAGGAGTCCAGGTGGCCGTTGACAGTCTTCCGACAAAGATGCTG
GAGGGTGGCCACGTTGGAGGAGAGAGGTCGGCTCAGTACCAGCGGAATCT
TCTCGCCCCCAGAATAGATGTAGTAAGCTCTCTTGGGGGTACTCCCGGGG
AGTGCCTGGGCAGGTGGCTGCTCCGGAACTTCGGACGAGGGTTCCGTGGG
TGGCAAAGAAAAGGAGGGGGTCCCTGGGGGCGGCATGTAGTGGTGCACCA
GCTTGAGTACACAGTCGAAGCGGGGAACTGGCTGCGTGCTTCGGGGGTCA
CTCTGCAGCGAAAAGCTGCCCCCCTCACACGGGATGCGTAGGTTCTTGGT
CCCCGACTGGGTCTTGACGCTCAACGTGTAGA

Query= MSMg01no132_b04.b1 MSMg01no132_b04.b1 CHROMAT_FILE:
MSMg01no132_b04.b1 PHD_FILE: MSMg01no132_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:29 2005
         (342 letters)



>mm_chr11_117967116_117967857
          Length = 742

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatgatctaccttcctagacaggggtggtccccagccaggtccctaacctgcctccccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 atatgatctaccttcctagacaggggtggtccccagccaggtccctaacctgcctccccc 480

                                                                       
Query: 61  ccccccattggattatctattaaaaagggcaggtctcctccaaaagatggattccattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ccccccattggattatctattaaaaagggcaggtctcctccaaaagatggattccattct 420

                                                                       
Query: 121 ttacaagatggagcaaacctgggcagagccactcccatctgttctgtacccacgagtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttacaagatggagcaaacctgggcagagccactcccatctgttctgtacccacgagtctg 360

                                                                       
Query: 181 tggtgtgcagagatgcctgagccttggcatagaggagcaggtggcatgtcaaccttggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tggtgtgcagagatgcctgagccttggcatagaggagcaggtggcatgtcaaccttggaa 300

                                                                       
Query: 241 ccaagatacactgcacatgagcatacaggggctctgagaaggacacaggggcaagtgaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ccaagatacactgcacatgagcatacaggggctctgagaaggacacaggggcaagtgaaa 240

                                                  
Query: 301 tctcagccttgccaggagccttcctgtagtgtgggtttg 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tctcagccttgccaggagccttcctgtagtgtgggtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_b04.g1 MSMg01no132_b04.g1 CHROMAT_FILE:
MSMg01no132_b04.g1 PHD_FILE: MSMg01no132_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:29 2005
         (467 letters)



>mm_chr11_117828496_117829362
          Length = 867

 Score =  895 bits (463), Expect = 0.0
 Identities = 466/467 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtcctgccagctctactctgcgggagtggagggcctgaggaagaagccaatctgccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtcctgccagctctactctgcgggagtggagggcctgaggaagaagccaatctgccc 260

                                                                       
Query: 61  ctggctcactgggagctaccgaccgttggggctggatttttgtgcttgtgccatgtgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggctcactgggagctaccgaccgttggggctggatttttgtgcttgtgccatgtgcct 320

                                                                       
Query: 121 cggaggagaggcgaccgaccgacccaggcccccctctgacccttttgctccttaaagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggaggagaggcgaccgaccgacccaggcccccctctgacccttttgctccttaaagtgg 380

                                                                       
Query: 181 agcatcatactgatccaggaactcccgaatgggtccaggcagctgggtcactttctcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcatcatactgatccaggaactcccgaatgggtccaggcagctgggtcactttctcata 440

                                                                       
Query: 241 ggagtccaggtggccgttgacagtcttccgacaaagatgctggagggtggccacgttgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagtccaggtggccgttgacagtcttccgacaaagatgctggagggtggccacgttgga 500

                                                                       
Query: 301 ggagagaggtcggctcagtaccagcggaatcttctcgcccccagaatagatgtagtaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggagagaggtcggctcagtaccagcggaatcttctcgcccccagaatagatgtagtaagc 560

                                                                       
Query: 361 tctcttgggggtactcccggggagtgcctgggcaggtggctgctccggaacttcggacga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcttgggggtactcccggggagtgcctgggcaggtggctgctccggaacttcggacga 620

                                                          
Query: 421 gggttccgtgggtggcaaagaaaaggagggggtccctgggggcggca 467
           ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 gggttccgtgggtggcaaagaaaaggagggggtccctggaggcggca 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)