BAC Information

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BAC

Clone NameMSMg01-132J03
Chromosome11 (Build37)
Map Location 11,751,712 - 11,752,302
singlet/doubletsinglet
Overlap geneDdc
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1
Downstream geneGrb10, Cobl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132J03.T7 (MSMg01no132_j03.b1)MSMg01-132J03.TJ (MSMg01no132_j03.g1)
ACCAG339778AG339779
length710704
length of high quality
(start - end)
547 (44 - 590)591 (69 - 659)
definitionCHROMAT_FILE: MSMg01no132_j03.b1 PHD_FILE: MSMg01no132_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:07 2005CHROMAT_FILE: MSMg01no132_j03.g1 PHD_FILE: MSMg01no132_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGAACTTTTCACCTGGGGAACGAGAGTACCAGTGAGTACAGCTTTAC
GAGGTAAGTCTGGTCTTGAACTTTCTAAGGAAATTCAAGACAGTCTATCA
GAAGTAAAGTGGAATATGTTTGGTCTTGAATTTTTTCTAGTGTTAGAAGC
CCTTTTGTTCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCGGATTC
TAGATGAAATTCAGGACAATCTATCAGAAGTAAAGTGGGGAGAGAGAGTA
GGAACAAAGAGGAAATATGGTACACAAAATAAGTATACAGGCCTTTCCAA
GGGTCTTGAACCCGAGGAAAAGTTAAGGTTAGGTAGGAATACCTGGAGAG
AGATTAGAAGAAAAAGAGGAAAAAGGGAAAAGAAGAAAGATCAATTAGCG
GAGGTCTCTAGGAAAAGGAGCCTGTGCTCATCGCTGGATGGGCTCGGGGA
GCCAGCTCTTGGTAGCTCTGAATCAGATGATGAATTCTCCTCTGAAGAAA
CAGACTGGGAGGAAGAAGCACGTCATTATGGGAAAAAAGGGTACCAGCCA
GGTAAAGTGCTAGCTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAAG
CCAGTTTGCTGATTGGCCTCAGGGCAGTCGGCTTCAAGGTCCGCGCTATG
CGGAGTCCCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCCCCGAAATTCAAAAATGGAATAGTGTTTCTCTCTCCCCTCCT
GAATAAATACAGGACTTTATTTGAATGAGCTGTGCAGTGTTCACTTAATG
TTCCTGCGTTTCCCCTCAGCCAATTTCTTCAGTTGAGCACATGAATACAG
TTGACCCTCTGTATATGAGGTTTGATTTTAGGTTGGGTTCCAACAACCTC
AAATCAAAATACTAGGAAAAATTCACTCTCCACAAGATAGAACCCACTTT
TGACACTGCTTGGGTGGCCAAGAATCTGAGACCACAGACTTAGGGGAAAA
CTGAACACTACTGTTCAGCTATAGGAATGGAGCAATAAAACGACTCTTAA
TGACATTCTGCTATACTCATAGATCACTGTCTTGCTCAACCATCATTAGA
GAAGCCTCCCCCTGTAGTAGATGGGAACTAATGCACAGACCCATAATGGG
ACAGTGTGAAGAGAATAAGAGACTGCTCAGTCCTAAAAGGGAGGTATTCA
TCAAATTCCTGCCCTCAGGGCTCAGGGAACTATATGGCAGAGGAGGCAAA
AAGATTGTAGGAGCCAGGGGGGTTGAACAATACCAAAGGAACAGTGTCTT
CCAGACAAAACCGGACTGATACACACATGAACCGATGGAGACCGCAGCAG
CACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_j03.g1 MSMg01no132_j03.g1 CHROMAT_FILE:
MSMg01no132_j03.g1 PHD_FILE: MSMg01no132_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:07 2005
         (591 letters)



>mm_chr11_11751512_11752502
          Length = 991

 Score = 1127 bits (583), Expect = 0.0
 Identities = 589/591 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaatggaatagtgtttctctctcccctcctgaataaatacaggactttatttgaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaatggaatagtgtttctctctcccctcctgaataaatacaggactttatttgaatga 260

                                                                       
Query: 61  gctgtgcagtgttcacttaatgttcctgcgtttcccctcagccaatttcttcagttgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtgcagtgttcacttaatgttcctgcgtttcccctcagccaatttcttcagttgagc 320

                                                                       
Query: 121 acatgaatacagttgaccctctgtatatgaggtttgattttaggttgggttccaacaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgaatacagttgaccctctgtatatgaggtttgattttaggttgggttccaacaacc 380

                                                                       
Query: 181 tcaaatcaaaatactaggaaaaattcactctccacaagatagaacccacttttgacactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaatcaaaatactaggaaaaattcactctccacaagatagaacccacttttgacactg 440

                                                                       
Query: 241 cttgggtggccaagaatctgagaccacagacttaggggaaaactgaacactactgttcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgggtggccaagaatctgagaccacagacttaggggaaaactgaacactactgttcag 500

                                                                       
Query: 301 ctataggaatggagcaataaaacgactcttaatgacattctgctatactcatagatcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctataggaatggagcaataaaacgactcttaatgacattctgctatactcatagatcact 560

                                                                       
Query: 361 gtcttgctcaaccatcattagagaagcctccccctgtagtagatgggaactaatgcacag 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 gtcttgctcaaccatcattagagaagcctcctcctgtagtagatgggaactaatgcacag 620

                                                                       
Query: 421 acccataatgggacagtgtgaagagaataagagactgctcagtcctaaaagggaggtatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acccataatgggacagtgtgaagagaataagagactgctcagtcctaaaagggaggtatt 680

                                                                       
Query: 481 catcaaattcctgccctcagggctcagggaactatatggcagaggaggcaaaaagattgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catcaaattcctgccctcagggctcagggaactatatggcagaggaggcaaaaagattgt 740

                                                              
Query: 541 aggagccaggggggttgaacaataccaaaggaacagtgtcttccagacaaa 591
           |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 aggagccaggggggttgaacgataccaaaggaacagtgtcttccagacaaa 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)