BAC Information

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BAC

Clone NameMSMg01-132P06
Chromosome11 (Build37)
Map Location 104,640,568 - 104,640,927
singlet/doubletsinglet
Overlap geneLOC629960
Upstream geneWnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739
Downstream geneLOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132P06.T7 (MSMg01no132_p06.b1)MSMg01-132P06.TJ (MSMg01no132_p06.g1)
ACCAG340056AG340057
length695699
length of high quality
(start - end)		651 (45 - 695)565 (70 - 634)
definitionCHROMAT_FILE: MSMg01no132_p06.b1 PHD_FILE: MSMg01no132_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:38 2005CHROMAT_FILE: MSMg01no132_p06.g1 PHD_FILE: MSMg01no132_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATAATTTGCGGCGCTAAACGACTCCTATTTTCAGAAATGCCGCGGAA
TTCATGGCAACTCTCTCTCTGCTTCCCAAGTTCTGGATCATAGCATGCAT
TCCCAGCATTACTAGGTTCAGCTCCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTTCCCTCTCCCTCTGTGTGTGTGTGTGTGTAAG
TGTCCTTAGAAATAAAATAATTTTTTAAAAAGATCTATTTTATTTTATGT
ATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGA
TCCCATTACAGATGCTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACT
CAGGACCTCTAGAAGAACAGTCAGTGCTCTTAACCACTGAGCCATCTCTC
CAGCCCCGGAAATAAAATTCTTTAAAAAATTTAAAAATGTTGTTAGTCTT
GTTTAAATCTTACTGAGTTCTAGTACATGAGATTAAAGCTAGTCTCACAA
ACCTCTTTAAGACATATTTTGGGCTTCTGCTGATGGAAAAAGACTTTATG
CTTTCTTAGAAGTTAACTGATTTTTAATAAAAGAACCTAGAATAGACAAT
GGGGAAATGGCAATCTCTTCTATAGATGCTGCTGAGAAAAGAGAATATCT
ACATACTAGAGAAAGGAATTGGGCACATATATTGATGGATTGTAN

TGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGCTAACTCTATCTCTTCCCTTCCTGTAA
CAGCCTAGTTTCTGGAGAGAAAGTTTCATTCATATATTCATTTGCAGCTC
TAACTACTGGTCGCTAGCTTTTATCGACTACCACAAAATCTGTTCTTACT
AAGTTTGCCAGTTAACTTATTGGAGAGGGAGGTGTTGATTCCCTAATTGG
TTCTTGAGTGTGCCAATAAAGGAGGCAGAAGCCAATTGCTGGATGAAGGG
AAAAAGCTGGGACTTCCAGGTCCCAGGGCAAAGAGAAGAGATGCAGAGAA
AAAGAATTTGGCCCAGGCTTTGGAACAAGGAGGAAGCTACAGTCATGTAG
GTCTCGGGGCACCTAGAGTTTGTAGCCTCCACCACAAGCAGGGACCAAGG
AGGATGAAGGGAGCTAGCTGATGAGATTAAGGCAGGAAATTCTTTGCCCA
GCCATTGAGTTATCTGGCTAGTTTTAAAATAATGAAACTGTCTAGTGTTT
TCCATCCACGGGGCTAAGGTGGGCTGGAAGAGAAAGAGGGCAGCTGGGAC
AGTTGTTCAGGGCTTGGCAAAGCTAGCTGTGAGGGGCTGGGGGAATGGTC
CCAGCTCCCAGGAACAATGGCCAGCTGGCCATTGGCAGAGCTGAGTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_p06.g1 MSMg01no132_p06.g1 CHROMAT_FILE:
MSMg01no132_p06.g1 PHD_FILE: MSMg01no132_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:38 2005
         (565 letters)



>mm_chr11_104640568_104641532
          Length = 965

 Score =  673 bits (348), Expect = 0.0
 Identities = 357/360 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgctaactctatctcttcccttcctgtaacagcctagtttctggagagaaagtttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tctgctaactctatctcttcccttcctgtaacagcctagtttctggagagaaagtttcat 301

                                                                       
Query: 61  tcatatattcatttgcagctctaactactggtcgctagcttttatcgactaccacaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 300 tcatatattcatttgcagctctaactactggtcgctagcttttatcgactatcacaaaat 241

                                                                       
Query: 121 ctgttcttactaagtttgccagttaacttattggagagggaggtgttgattccctaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctgttcttactaagtttgccagttaacttattggagagggaggtgttgattccctaattg 181

                                                                       
Query: 181 gttcttgagtgtgccaataaaggaggcagaagccaattgctggatgaagggaaaaagctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 180 gttcttgagtgtgccaataaaggaggcagaagccaattgctggatgaaggggaaaagctg 121

                                                                       
Query: 241 ggacttccaggtcccagggcaaagagaagagatgcagagaaaaagaatttggcccaggct 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 120 ggacttccaggtcccagggcaaagagaagagatgcagagaaagagaatttggcccaggct 61

                                                                       
Query: 301 ttggaacaaggaggaagctacagtcatgtaggtctcggggcacctagagtttgtagcctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  ttggaacaaggaggaagctacagtcatgtaggtctcggggcacctagagtttgtagcctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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