BAC Information

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BAC

Clone NameMSMg01-133K01
Chromosome11 (Build37)
Map Location 55,890,372 - 55,890,542
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1, Nmur2
Downstream geneLOC100040816, LOC624168, Gria1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133K01.T7 (MSMg01no133_k01.b1)MSMg01-133K01.TJ (MSMg01no133_k01.g1)
ACCAG340554AG340555
length692466
length of high quality
(start - end)
497 (67 - 563)---
definitionCHROMAT_FILE: MSMg01no133_k01.b1 PHD_FILE: MSMg01no133_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:29 2005CHROMAT_FILE: MSMg01no133_k01.g1 PHD_FILE: MSMg01no133_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTAAACGACTCCTATATCCAGAGAAGCGCGGAATTCAA
TTCAGATGGCAATCGGTGACTCTCAGTATTTTCCAGGTGTTTCTGTCCTG
TGTGGTTCTGTTGCCAGAGTCAGACTGGATAGCTGATGTCTTGGGGCCCT
CAGGATCACATATACACATCGGGCTACCCAAGTCTGTGTCTCTTACCAGG
TCCTGCATTCACAAGGAGAAACAAGATACTATTCTTTTTTAAAAAATATT
TTTATTAAGTATTTTCCTCAATTACATTTCCAGTGCTCTCCCAAAAGTCC
CCCATACCCTCCCCCCCACTTCCCTACCCACCCATTCCCATTTTTTTGGC
CCTGGCGTTACCCTGTACTGGGGCATATAAAGTTTGTGTGTCCAATGGGC
CTCTCTTTCCAGTGATGGCCAACTAGGCCATCTTTTGATACATATGCAGC
TAGAGTCAAGAGCTCCAGGCTACTGGTTAGTTCAGAATGTTGTTCCACCT
ATAGGGTTGCAGACCTTTAGCAGACCTAAGTACCCTTTAGCTCCTTGGGT
ACTTTCTCTAGCTCCTCCATTGAGGGCCCTGTGATCCATCCAATAACTGA
CTGTGAGCATCCCCTTCTGTGTTTGATAGGCCCCGGCATAGTCTCACAAG
AGACAGCTTATATCTGGGGCCTTTCAGCAAAATCTTGCTAGG
TTTTTCCTCCCTTTTTTATTTCTTAATTTTTTTTTTTTTTTTTTAACCAA
TTTTTTTTTTTTTTTTCTTTTTTTTTTCACCCTTACCTTTTATTCCTTCC
TTTTCCCTCCTCTTCTTCACTTTCCATATCCCACCCCCACAAACATTATT
CTACACAATCAAATATCCCCACCCCCCCCTCATTACCCCCACCCATCCCC
CCCTTCCCTATTCCCCACCTAACCTTCTTTCTCCCCAACACTAACAAACC
CCCNNNNCAAGGAGGAGANNAAGAAAAGAATAATAAACCCCCCCCTTAAA
AAACCAACAATCCACCACAAAACANNNCCCATCAGTGGTAGCCTGNCGAC
GNCTGGTGTCGNCAGTTGGTNNACTATAGAGGCATTTGCGAAAATCACAC
AGTTTATATACGAAACAGAAGGCTTGCCACCACGTTCCAGGCTGTGCCAT
TCCTTAGTCGGGAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_k01.b1 MSMg01no133_k01.b1 CHROMAT_FILE:
MSMg01no133_k01.b1 PHD_FILE: MSMg01no133_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:29 2005
         (497 letters)



>mm_chr11_55890172_55891068
          Length = 897

 Score =  284 bits (147), Expect = 7e-81
 Identities = 165/171 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgactctcagtattttccaggtgtttctgtcctgtgtggttctgttgccagagtcagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgactctcagtattttccaggtgtttctgtcctgtgtggttctgttgccagagtcagact 260

                                                                       
Query: 61  ggatagctgatgtcttggggccctcaggatcacatatacacatcgggctacccaagtctg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ggatagctgatgtcttggggccctcaggatcacatctacacatcgggctacccaagtctg 320

                                                              
Query: 121 tgtctcttaccaggtcctgcattcacaaggagaaacaagatactattcttt 171
           ||||||||||||||||||||||| |  ||||||||||||| || |||||||
Sbjct: 321 tgtctcttaccaggtcctgcatttatgaggagaaacaagacaccattcttt 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)