Query= MSMg01no133_n01.b1 MSMg01no133_n01.b1 CHROMAT_FILE:
MSMg01no133_n01.b1 PHD_FILE: MSMg01no133_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:43 2005
(661 letters)
>mm_chr16_3354170_3355230
Length = 1061
Score = 435 bits (225), Expect = e-126
Identities = 426/509 (83%), Gaps = 40/509 (7%)
Strand = Plus / Plus
Query: 5 gaattcagtaaacattc--aaagaattgaatttcagatctacctgaatagggcgatgcaa 62
|||||||||||||| | ||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 179 gaattcagtaaaca--cagaaagaattgaatttcagatatacctgaatagggcaatgcaa 236
Query: 63 gag-tacctactgttccactttatccagaatgtcaaaaatagagtagactccttaaaagt 121
| | |||| |||| ||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct: 237 g-gctacccactgctccactttatccagaatatcaaaaatagagtagactccttaacact 295
Query: 122 tccacccactgtaatttcgtgtacaccctttgctgcttgaggca--------gagc-aag 172
|||||||||||| |||| ||||||| || |||||||| ||||| |||| ||
Sbjct: 296 tccacccactgttatttagtgtacatccagtgctgcttcaggcactgactgtgagcaaaa 355
Query: 173 gacccacaaagtgcttactgcctcgacttttgacctaatgtcagagat----------tc 222
|||||||||| |||| |||||||| | || |||||||||||||||||| ||
Sbjct: 356 gacccacaaactgctcactgcctccaattctgacctaatgtcagagatagcgtcaatgtc 415
Query: 223 --c-gaat----gcagaaccccaacaatgtagccagcgttgtctgcagttgagatccaag 275
| |||| |||||| || |||| | ||| | ||||||||||||||||||||||
Sbjct: 416 agcagaatgtcagcagaagcctgacaacggggcctgtgttgtctgcagttgagatccaac 475
Query: 276 taaaataacaccttgcccact-gtggggctcgaacctacaaccctgagactaagagtctc 334
|||||||||| || |||| | | ||||||||||||||||||||||||| ||||||||||
Sbjct: 476 taaaataacatctcaccca-tagcggggctcgaacctacaaccctgagattaagagtctc 534
Query: 335 ctgctctactgactgagctagctgggcaactgctctctagt-ttacaagtttacgtg--t 391
|||||||| ||||||||||||||||||||||||||||| | ||| ||||||| || |
Sbjct: 535 atgctctacagactgagctagctgggcaactgctctcta-tcttagaagttta--tgaat 591
Query: 392 tgtgacccgaaggtattgaccaggcaaagtaaatgaagccatttcagattgagagcagct 451
||||||| ||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 592 tgtgacctgaatgtatttacctggcaaagtaaatgaagccatttcagattgagggcagct 651
Query: 452 tgtaaaagaagaagtttcacctccacaca 480
| ||||| |||||||||||||||||||||
Sbjct: 652 tctaaaacaagaagtttcacctccacaca 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_n01.g1 MSMg01no133_n01.g1 CHROMAT_FILE:
MSMg01no133_n01.g1 PHD_FILE: MSMg01no133_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:43 2005
(626 letters)
>mm_chr11_3093270_3094295
Length = 1026
Score = 1141 bits (590), Expect = 0.0
Identities = 617/626 (98%)
Strand = Plus / Minus
Query: 1 actcattaggccaggttttctttaactgcagggatccccctgcctcaccctcccacaaat 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 826 actcattaggccaggttttctttaactgcagggatccccctgcctcagcctcccacaaat 767
Query: 61 gactgttaccaataattgcttttaaatctttggattacaaaattaccatttgtaaaaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gactgttaccaataattgcttttaaatctttggattacaaaattaccatttgtaaaaggg 707
Query: 121 caaaacccatatttcttgggtttaatctttttaaaaattttgagtatgaatgttttgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 caaaacccatatttcttgggtttaatctttttaaaaattttgagtatgaatgttttgctt 647
Query: 181 gcatataggtcaaacgggagcgcgacttgggagtcacaactgttttaagagccaccgtgt 240
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 646 gcatataggtcaaacgggagcgcgacttgggagtcacggctgttttaagagccaccgtgt 587
Query: 241 gggtattgggagtctggatgaatgaaaagtgcatttaactggtgagtcatatctcctgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gggtattgggagtctggatgaatgaaaagtgcatttaactggtgagtcatatctcctgcc 527
Query: 301 ccttggttttcgtcttcagacacccacccactagttttcactgttcttagtttgaaactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 526 ccttggttttcgtcttcagacacccacccactagttttcactgttcttagtatgaaactt 467
Query: 361 catactctgttctgaaagttctctttaaagattcggctgtttgatgcggagattaccgac 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 catactttgttctgaaagttctctttaaagattcggctgtttgatgcggagattaccgac 407
Query: 421 gtgagccaccacgcaatgaaaagagacacttttccgtctcacaccggtcccatgcaggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtgagccaccacgcaatgaaaagagacacttttccgtctcacaccggtcccatgcaggag 347
Query: 481 ttgtaactagtgacccgcttctcagaagcgcagaaacttcagggcaagaaaaccgtagga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttgtaactagtgacccgcttctcagaagcgcagaaacttcagggcaagaaaaccgtagga 287
Query: 541 agccgagcttagagagaagtctcggtttcctggaagacagagcgcactaagctcgacaga 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 286 agccgagcttagagagaagtctctgtttcctggaagacagagcgcactaagctggacaga 227
Query: 601 gcagcttccggcgtgggccgcgttgc 626
||||||||||||| ||| ||||||||
Sbjct: 226 gcagcttccggcgcgggtcgcgttgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
