BAC Information

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BAC

Clone NameMSMg01-135A04
Chromosome11 (Build37)
Map Location 12,316,968 - 12,317,423
singlet/doubletsinglet
Overlap geneCobl
Upstream geneZpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135A04.T7 (MSMg01no135_a04.b1)MSMg01-135A04.TJ (MSMg01no135_a04.g1)
ACCAG341583AG341584
length789712
length of high quality
(start - end)
54 (89 - 142)459 (75 - 533)
definitionCHROMAT_FILE: MSMg01no135_a04.b1 PHD_FILE: MSMg01no135_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:01 2005CHROMAT_FILE: MSMg01no135_a04.g1 PHD_FILE: MSMg01no135_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTATTTTGCTGCCGCTCATACTACTTCTTTTTTTTCCAAAGAAACGCG
GTATTCATAGGTTATTATCTCAGCTGAAACATAGTTTGAAGGCCAGGTGG
AGTTTGATAATACTGCTTCAGGGGCCACAGTTTTCTACAGTATACTGGTG
ATAAATAGATGTGTAGACCTGTATTTGACTGATAATAGATACCTGCTTGA
AGAAAACAGTGCATGTTCTGCACGTATACTTTGAATTCACTATCAAGTTT
GTGTTATGTTGCTCTACAGACGTAGATAACGATAGATATGTTTCGATTGG
TGATGACATTGCAGGTTAAAGTAGCTCCCATTCCTCCAGGAAAAAATGAG
TATTCTCATTCTTTTCTGACCCTGTTTTATTTATTGATCTGCTGTTTATC
TTTTCACACTTCGCTTCCTTCCTAAAACCTTAGTTCATTATTCTATTATT
CCTAAAGATCTATTACGTTTTTCTCCCCCTCATTTCACCCTCCTTTATCT
CTTTCTCCCACATACCTCCCCCACTCCTCCCTCACATAATTCATTTCATA
CTCCTCTTAACATCCTCCTTCCACTACTAACTATTACTCCACTACCATTA
ATATTAAATCCTAAACCCACAACCACACCCCTGCCCCCCACATTCCCCCC
CTCCCTTCTCCTCACTATTTTTACCCATAACTTAAACCCCCCCTACACAC
TCCACCTAACCACATCTCCAATATATCCCTCCCTCACTCATCCCTATATA
TTCTCNCTCTCGTCATCCCTCCTTTTCACGCCACCCCCN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTACTGGTCAGCTGAGTGACTATGAA
GGGTGAGGCCACCTCTAGAGACTGAATTGCTCTTGTATTGGTAGCAGGAT
TGTTTTCCTGTAACTGTATGTAGTCTTTCATGATACGAGACACAGAGCTC
TAGTCATAATTCATTGTAAGCCCCATATGAATGTACGTGCCGGGAGGACA
AGGCAACTGGTCTACCAGCAAATAATTAAGACCTGGATGATGCCATTTCC
TATAGTGTCTGAAGCTGGCCACCAATACACTTGTTCAGAGGAGACTTGGC
AAAGACTGCTCTGTGACTGCTTGGCCCTTTGCCCAGGGAAAGATGAAGAA
ACGCTCTCAGACTGGCTGAATGTCACTGTGTACCCAGCAGTACCCCAGAC
ACACTTATAGACATTTCCTCACTTGATCTTTATCGTTACAGAAACAGCAG
TGTGAGATGGCTGGGATGATCCCTCTTTCATCACAATGTGCATTTAAATG
CTTATTTTTAGACAAAGGAATCTGGCAGGCTCGGGAATAGTGTAAGATAT
TCAGATTAATTCAGGCTTTGCAAAAATCCTGTGGGTCANGTTCTTATTAG
GAATTTTGGGAATATACGTTTGACTAACACCTTGACGAATACTTTTAGTT
AAGTGAGGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_a04.g1 MSMg01no135_a04.g1 CHROMAT_FILE:
MSMg01no135_a04.g1 PHD_FILE: MSMg01no135_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:01 2005
         (459 letters)



>mm_chr11_12316768_12317626
          Length = 859

 Score =  843 bits (436), Expect = 0.0
 Identities = 451/456 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctactggtcagctgagtgactatgaagggtgaggccacctctagagactgaattgctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ctactggtcagctgagtgactatgaagggtgaggccacctctagagactgaattgctctt 597

                                                                       
Query: 61  gtattggtagcaggattgttttcctgtaactgtatgtagtctttcatgatacgagacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 596 gtattggtagcaggattgttttcctgtaactgtatgtagtctttcatgataagagacaca 537

                                                                       
Query: 121 gagctctagtcataattcattgtaagccccatatgaatgtacgtgccgggaggacaaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gagctctagtcataattcattgtaagccccatatgaatgtacgtgccgggaggacaaggc 477

                                                                       
Query: 181 aactggtctaccagcaaataattaagacctggatgatgccatttcctatagtgtctgaag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 476 aactggtctaccagcaaataattaagacctggatgatgccatttcctatagtgtctgagg 417

                                                                       
Query: 241 ctggccaccaatacacttgttcagaggagacttggcaaagactgctctgtgactgcttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctggccaccaatacacttgttcagaggagacttggcaaagactgctctgtgactgcttgg 357

                                                                       
Query: 301 ccctttgcccagggaaagatgaagaaacgctctcagactggctgaatgtcactgtgtacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ccctttgcccagggaaagatgaagaaacgctctcagactggctgaatgtcactgtgtacc 297

                                                                       
Query: 361 cagcagtaccccagacacacttatagacatttcctcacttgatctttatcgttacagaaa 420
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 296 cagcagtaccccagacacgcttatagacatttcctcacttgatctttatcgtcacagaaa 237

                                               
Query: 421 cagcagtgtgagatggctgggatgatccctctttca 456
           ||||||||||||||||||||||||||||| ||||||
Sbjct: 236 cagcagtgtgagatggctgggatgatcccgctttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)