Query= MSMg01no135_a20.b1 MSMg01no135_a20.b1 CHROMAT_FILE:
MSMg01no135_a20.b1 PHD_FILE: MSMg01no135_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:04 2005
(120 letters)
>mm_chr11_44146270_44146784
Length = 515
Score = 153 bits (79), Expect = 4e-42
Identities = 109/123 (88%), Gaps = 11/123 (8%)
Strand = Plus / Plus
Query: 1 aggcttgacagacacaccagtgattgacatacgctaagagcttgaccagtgttccaagaa 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 aggcttgacagacacaccagtgattgacatatgctaagagcttgaccagtgttccaag-- 258
Query: 61 gtctctccaggacagccatgttggttgagtgagacgcacgtcg--t----ttcttcttta 114
|||||||||||||||||||| ||| |||||| ||||| |||| | ||||||||||
Sbjct: 259 -tctctccaggacagccatgt-ggt-gagtgaaacgcatgtcgcatgtcgttcttcttta 315
Query: 115 ttg 117
|||
Sbjct: 316 ttg 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 515
Length adjustment: 8
Effective length of query: 112
Effective length of database: 507
Effective search space: 56784
Effective search space used: 56784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no135_a20.g1 MSMg01no135_a20.g1 CHROMAT_FILE:
MSMg01no135_a20.g1 PHD_FILE: MSMg01no135_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:04 2005
(418 letters)
>mm_chr11_44273284_44274102
Length = 819
Score = 758 bits (392), Expect = 0.0
Identities = 410/416 (98%), Gaps = 1/416 (0%)
Strand = Plus / Minus
Query: 1 caggccagtgagggctatatataatgagaccctatctcaaaaattaaatttaatgaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 caggccagtgagggctatatataatgagaccctatctcaaaaattaaatttaatgaatta 647
Query: 61 gtttaaaaaaatttaaaaatgaattataatgatgtaattaaggatactggaggactatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gtttaaaaaaatttaaaaatgaattataatgatgtaattaaggatactggaggactatca 587
Query: 121 agaaaggaactgcgtcaaggctgtgatagatgag-aaaaccactgaacattagcaaggag 179
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 586 agaaaggagctgcgtcaaggctgtgatagatgagaaaaaccactgaacattagcaaggag 527
Query: 180 caagctggaaacacagcgagttctgctcactcttctctggaagaagctgccgcactgtag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 caagctggaaacacagcgagttctgctcactcttctctggaagaagctgccgcactgtag 467
Query: 240 tacagggatcaggttgcacgtggacccctagaaaatactagcagacatcggaggagagga 299
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 466 tacagggatcaggttgcacgtggacccctagaaaataccagcagacatcggaggagagga 407
Query: 300 tcaggctttaaaaatggctaattttaatgtgcttgactcctcaagtgactgctgctacaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcaggctttaaaaatggctaattttaatgtgcttgactcctcaagtgactgctgctacaa 347
Query: 360 ggccctgcagcaggcatggttagagagataagggacccgtcatccatgccttttga 415
||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||
Sbjct: 346 ggccctgcagcaggcatggctagagagatgagggacccgtcatccgtgccttttga 291
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 819
Length adjustment: 9
Effective length of query: 409
Effective length of database: 810
Effective search space: 331290
Effective search space used: 331290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
