Query= MSMg01no135_b15.b1 MSMg01no135_b15.b1 CHROMAT_FILE:
MSMg01no135_b15.b1 PHD_FILE: MSMg01no135_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:08 2005
(531 letters)
>mm_chr11_108196085_108197015
Length = 931
Score = 942 bits (487), Expect = 0.0
Identities = 518/529 (97%), Gaps = 3/529 (0%)
Strand = Plus / Plus
Query: 5 gaattcatctaaagccggagtaaggagacacctcagcggaaatgtttactatacaaccat 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 204 gaattcatctaaagg-ggagtaaggagacacctcagcggaaatgtttactatacaaacat 262
Query: 65 gaagacctgagttcaaatcccctgagcccaggttcgaaagcccgagcagtatggtgcaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaagacctgagttcaaatcccctgagcccaggttcgaaagcccgagcagtatggtgcaga 322
Query: 125 tatgcaatcctaatgttcctaaagggagataggagatagagacaggagaatctccagtag 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tacgcaatcctaatgttcctaaagggagataggagatagagacaggagaatctccagtag 382
Query: 185 ttctt--gccagtggaagaaaacaggctctgtctctacaaggtggaagacaaggaccact 242
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttcataagccagtggaagaaaacaggctctgtctctacaaggtggaagacaaggaccact 442
Query: 243 gtctgagttcactctcctgtctctgcatgtatgctggagcatgtgggcagctccattcac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtctgagttcactctcctgtctctgcatgtatgctggagcatgtgggcagctccattcac 502
Query: 303 aaacaaaggtgcacacagatatgcatgtgcacaaagaggctttagaaaagagtttagtta 362
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 503 aaacaaaggtgcacacagatatgcacgtgcacaaagaggctttagaaaagagtttagtta 562
Query: 363 taactatcatgtaggagtgaggaacctgtcagaaaggggaggtcaaagggtgagtctctg 422
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 563 taactatcatctaggagtgaggaacctgtcagaaaggggaggtcaaagggcgagtctctg 622
Query: 423 ctttatagacgaatgattacagaaacctctgacacaggtgtgaagcctgtgggcagctag 482
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctttatagacgaatgactacagaaacctctgacacaggtgtgaagcctgtgggcagctag 682
Query: 483 agcttactctaagttttaggtggttgagtttttgtgctacctataagat 531
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agcttactctaagttttaggtggttgagtttttgtgctacctataagat 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_b15.g1 MSMg01no135_b15.g1 CHROMAT_FILE:
MSMg01no135_b15.g1 PHD_FILE: MSMg01no135_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:08 2005
(669 letters)
>mm_chr11_108380231_108381303
Length = 1073
Score = 980 bits (507), Expect = 0.0
Identities = 554/571 (97%), Gaps = 5/571 (0%)
Strand = Plus / Minus
Query: 1 catccttaaacctttagtgctttaggagagcgtcaagcagaact---tgctaagtgctgt 57
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 571 catccttaaacctttagtgctttaggagagcgtcaagcagaccttgctgctaagtgctgt 512
Query: 58 gtgggctaagaaacagtg-tttcagcaccctagacagcatagtgtgttttgacgtctggt 116
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtgggctaagaaacagtgttttcagcaccctagacagcatagtgtgttttgacgtctggt 452
Query: 117 ggattccagaacaggatgaaggggctaatctcaaatggaaacaactggctgatgcatctt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ggattccagaacaggatgaaggggctaatctcaaatggaaacaactggctgatgcatcgc 392
Query: 177 tgccatgctgcacacttgtgcagatgtgcctacctactcgtacaataccttagaagttga 236
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 391 tgccatgctgcacacttgtgcagatgtggctacctactcgtacaataccttagaagttga 332
Query: 237 aagtgcatgctcttgtctcaggagatttatgtcagagtcatatttagtttttaataattt 296
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 331 aagtgcatgctcttgtctcaggagatttatgtcagaatcatatttagtttttaataattt 272
Query: 297 cacattttgttcatagtcatttacaagatgttctttctctttatgtagtatgttgcgcct 356
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cacattttgctcatagtcatttacaagatgttctttctctttatgtagtatgttgcgcct 212
Query: 357 gaaacagtaagat-aaaaatattatatatttttggaaccaatctctaaaatggatatcaa 415
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 211 gaaacagtaagataaaaaatattatatatttttggaaccaatctctaaaatggatagcaa 152
Query: 416 ctaaactaataatcaactaaatttaaatatattctctttttatatatgaagtaagtatcc 475
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 151 ctgaactaataatcaactaaatttaaatatattctcattttatatatgaagtaagtatcc 92
Query: 476 gcattttcatcaactggtttcaaacactatgtttttaagtattttaaaaaatatgaaaag 535
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 gcattttcatcaacttgtttcaaacactatgtttttaagtattttaaaaaatatgaaaag 32
Query: 536 aatcccgcttaggtaggaacattataagatt 566
|||||| ||||||||||||||| ||||||||
Sbjct: 31 aatcccacttaggtaggaacatcataagatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1073
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1063
Effective search space: 700517
Effective search space used: 700517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
