Query= MSMg01no135_c05.b1 MSMg01no135_c05.b1 CHROMAT_FILE:
MSMg01no135_c05.b1 PHD_FILE: MSMg01no135_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:11 2005
(615 letters)
>mm_chr11_11868247_11869257
Length = 1011
Score = 1133 bits (586), Expect = 0.0
Identities = 604/612 (98%), Gaps = 4/612 (0%)
Strand = Plus / Minus
Query: 4 ggaattcacagatgtgcgtgcagtccactatgcttgggattgttgcccagcctctgtcca 63
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 811 ggaattcacagatgtgtgtgcagtcgactatgcttgggattgttgcccagcctctgtcca 752
Query: 64 gctggagttccagcggttgtactttctcagcactgcctattctgggacgttccgctcctc 123
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 751 gctggagttccagcggttgtactttctcagcactgcctattctgggacgttctgctcctc 692
Query: 124 cctgcttccagaaccgtctaaaagggttctttatggtctgacattaaatcttcttcagcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 cctgcttccagaaccgtctaaaagggttctttatggtctgacattaaatcttcttcagcc 632
Query: 184 tcagtaaccagctcccctaggtgtctaccctttcccaggatgtgggtgctgggttcacac 243
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 631 tcagtaaccagctcccctaggtgt----cctttcccaggatgtgggtgctgggttcacac 576
Query: 244 tgctgaggggctcccggtgattacaacaggctgggtgagctaagtggaggaagatataaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgctgaggggctcccggtgattacaacaggctgggtgagctaagtggaggaagatataaa 516
Query: 304 ggaaaagtctgcaggaggcccagacatcccacaggctaaatgatggagcaggaggaggac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaaaagtctgcaggaggcccagacatcccacaggctaaatgatggagcaggaggaggac 456
Query: 364 tttggcgagggagagaattattttcaagtggatgaaccaggcaaggttttggaagcacag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tttggcgagggagagaattattttcaagtggatgaaccaggcaaggttttggaagcacag 396
Query: 424 acacctccacctcccaggtcctagcagttttgtagccatcttgatatctctgggtcctgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 acacctccacctcccaggtcctagcagttttgtagccatcttgatatctctgggtcctgg 336
Query: 484 gtcctctccacagacactttcattttgcagcttcagggacagcctcttttgatgtgagcc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtcctctccacagacactttcattttgcagcttcagggacagcctcttttgatgtgagcc 276
Query: 544 tctgtaacagggattgctttcatcttttcataatgccccttaattacacttctgggcagt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tctgtaacagggattgctttcatcttttcataatgccccttaattacacttctgggcagt 216
Query: 604 atctgtgaaatg 615
|||||||||||
Sbjct: 215 gtctgtgaaatg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1011
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1001
Effective search space: 605605
Effective search space used: 605605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_c05.g1 MSMg01no135_c05.g1 CHROMAT_FILE:
MSMg01no135_c05.g1 PHD_FILE: MSMg01no135_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:11 2005
(568 letters)
>mm_chr11_11798887_11799854
Length = 968
Score = 545 bits (282), Expect = e-159
Identities = 449/572 (78%), Gaps = 112/572 (19%)
Strand = Plus / Plus
Query: 1 tttttgttttcctgagggaagggaaacacagggctccaggagggaagaatgttgagataa 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tttttgttttcctgagggaagggaaacatagggctccaggagggaagaatgttgagataa 260
Query: 61 ggaagttagataggtttgagatatgcttgtgcgaatgtgtgtgtgtgtgtatatatatac 120
|||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 261 ggaagttagataggtttgagatatgcttgttcgaatgtgtgt-----------------c 303
Query: 121 acacatatacatatacatatacatatacatatacacatacacatacacatacacatacac 180
|||| || || || || ||||| ||||| ||||| ||||| ||||
Sbjct: 304 acac----ac----ac----ac----ac----acacacacacacacacacacacacacac 343
Query: 181 atacacatacacatacacatacacatacacatacacatacacatacacatatacatcata 240
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 acacacatacacatacacatacacatacacatacacatacacatacac------------ 391
Query: 241 tacatatacatcatatacatatacatatacatatacatatacatatacaatacgtataca 300
||||||||||||||||
Sbjct: 392 --------------------------------atacatatacatatac------------ 407
Query: 301 tatatataggcatgtgtacacacataccaggaagcttcagggaaaggggaaaagcacaga 360
||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 408 ---atataggcatgtgcacacacataccaggaagcttcagggaaaggggaaa---ac--- 458
Query: 361 gaaaagcacagagatgggcttcttgg----gtaacccaagggtggaagatttagttatgg 416
|||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 459 ------cacagagatgggcttcttgggtatgtaacccaaaggtggaagatttagttatgg 512
Query: 417 agtaacagaacatggcctatgagaccagctttagctcaggagagatggaagacactaagc 476
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 513 agtaacagaacatggcctatgagaccagctttggctcaggagagatggaagacactaagc 572
Query: 477 attcactttgggaattaaatttccgatgttctcttcttatctgagagtaaatatccgctt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 attcactttgggaattaaatttccgatgttctcttcttatctgagagtaaatatccgctt 632
Query: 537 ggcctttcaatatatgagcttcacgttcagaa 568
||||||||| ||||||||||||||||||||||
Sbjct: 633 ggcctttcagtatatgagcttcacgttcagaa 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
