BAC Information

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BAC

Clone NameMSMg01-136A22
Chromosome11 (Build37)
Map Location 106,637,408 - 106,638,064
singlet/doubletsinglet
Overlap genePolg2
Upstream geneTanc2, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885
Downstream geneDdx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136A22.T7 (MSMg01no136_a22.b1)MSMg01-136A22.TJ (MSMg01no136_a22.g1)
ACCAG342360AG342361
length697717
length of high quality
(start - end)		533 (54 - 586)47 (87 - 133)
definitionCHROMAT_FILE: MSMg01no136_a22.b1 PHD_FILE: MSMg01no136_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:19 2005CHROMAT_FILE: MSMg01no136_a22.g1 PHD_FILE: MSMg01no136_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTTNNNAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAGGTCAGCTTCGGGTTAGAAGGACGCTTTGTCACAA
AAAGCCAAAATTCGGGCCACTGAGATGGTTCAGTAAGCATGCCTGCCACT
CAGACCTAAATGTCTGAGTTGGATCCCTAGAACCCACACAGTGCAAACAG
AGAATTAACTCCCATCTCTACACATCTGCCATGGCATTCAGGACGGGCTC
GCCCCTATCCCCCCCAAATGCAGTAAGTAATGTTTTTTTTTTTTTTTTTA
AAGATTTATTTTGCCAGGTGGTCGTGGTACACACTTTAATCTCAGCACTG
GAGAGGCAGGCAGATCTCTGTAAATTCAAAGATTGAGTTACAGGCAGTGA
TAAGCTGCCTAACTTGGGTGCTGGGAACCAAATTCTTCCTCTAGAATACC
ACTGAACCATCTCTCCAGCTACACAATAATTTTCTTTGGAAGAAACTAAA
ACTGGCCTGGCAGTGGTGGCACACTGCCTTTAATCCCAGCACTTGGGAGG
CAGAGGCACGTGGATCTGGGGGGGGGGGGGGGAGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNCNNN

CCCAAANNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCCCGAATCCACAGTGAACACTAAGCA
ATACAGTTGATAGTTCCTCATTTTATGTTGTACATTCCCCACATATGTAT
ATGTATATGTATATGTATAGGTATATGTATAGGTATAGGCATACGCCCAC
CCCCCCCCCCNCCGCCCCCCCCCCCCCCCCTCCCCCCCCCGCCCCCCCCC
CCCCCCCCGCCTCCCCCCCCCCCCCCTGCCCCCCCTCCCCTTGCCCCCCC
CCCCCCTCTGCCCCCCCCCTGCCCCCTTCCTTTTTTCTCGTTACCCCCTC
CCCTCCCCCCTCCCACCCTCCGCCCCCCCCCCCCCCCCCCCGCCGCCCCC
CCCCTCCCCTCCCCTTCCCCCCCCGCCCCCCCCCCCCGTGTCATATGCCC
CCGCCCCCCCACCCCCCCCCTTTTTCCTCCCCCCCCCCCCCCCCCCCCCC
TCCCCCCCCCCCCCCNCACCCCCCCCCCCCCCCCCCACCGCCCCCCCCCC
CCCCCCCCCTCACCCTCCGACTCCCCCCCCCCCCCCCACCTCCCCCTTGT
TGCTCCCCTCCCCCTCCCCCCCCCCCCCCCCCCTTTTCCCCCCCCCCTTC
CCCCCACCCCCTCCCCCCCCCTCCCCTGCCCCCCCCCCCATCCCCCCCCC
CCTTTACACCCCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_a22.b1 MSMg01no136_a22.b1 CHROMAT_FILE:
MSMg01no136_a22.b1 PHD_FILE: MSMg01no136_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:19 2005
         (533 letters)



>mm_chr11_106637204_106638133
          Length = 930

 Score =  607 bits (314), Expect = e-178
 Identities = 499/660 (75%), Gaps = 153/660 (23%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggtcagcttcgggttagaaggacgctttgtcacaaaaagccaaaattcgggc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggtcagctt-gggttagaaggacgctttgtcacaaaaagccaaaattcgggc 263

                                                                       
Query: 65  cactgagatggttcagtaagcatgcctgccactcagacctaaatgtctgagttggatccc 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 cactgagatggttcagtaagcatgcctgccactcagacctgaatgtctgagttggatccc 323

                                                                       
Query: 125 tagaacccacacagtgcaaacagagaattaactcccatctctacacatctgccatggcat 184
           ||||||||||| |||||||  | || ||||||||| ||||||||||||||||||||||||
Sbjct: 324 tagaacccacagagtgcaa--atagtattaactccgatctctacacatctgccatggcat 381

                                                                       
Query: 185 tcaggacgggctcgcccctatcccccccaaatgcagtaagtaatgttttttttttttttt 244
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcaggatgggctcgtccctatcccccccaaatgcagtaagtaatgttttttttttttttt 441

                                                                       
Query: 245 ttaaagatttattttgccaggtggtcgtggtacacactttaatctcagcactggagaggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttaaagatttattttgccaggtggtcgtggtacacactttaatctcagcactggagaggc 501

                                                                       
Query: 305 aggcagatctctgtaaattcaaag------------------------------------ 328
           ||||||||||||||||||||||||                                    
Sbjct: 502 aggcagatctctgtaaattcaaagactgctctacaaagtgacttcaaggacaaccaggcc 561

                                                                       
Query: 329 ------------------------------------------att--------------- 331
                                                     |||               
Sbjct: 562 tagagaaaacctggagtggtgcgtgtgtgtcattttatttacatttacctgtctgtgtgc 621

                                                                       
Query: 332 ---------------------------------------------------------gag 334
                                                                    |||
Sbjct: 622 tatatgtttacagaagccttcagaggccagaagaaggagtcagatcccttagaggtggag 681

                                                                       
Query: 335 ttacaggcagtgataagctgcctaacttgggtgctgggaaccaaattcttcctctagaat 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttacaggcagtgataagctgcctaacttgggtgctgggaaccaaattcttcctctagaat 741

                                                                       
Query: 395 accactgaaccatctctccagctacacaataattttctttggaagaaactaaaactggcc 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 accactgaaccatctctccagctacacaataattttctttggaagaaactaaaactggcc 801

                                                                       
Query: 455 tggcagtggtggcacactgcctttaatcccagcacttgggaggcagaggcacgtggatct 514
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tggcagtggtggcacgctgcctttaatcccagcacttgggaggcagaggcacgtggatct 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 930
Length adjustment: 10
Effective length of query: 523
Effective length of database: 920
Effective search space:   481160
Effective search space used:   481160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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