BAC Information

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BAC

Clone NameMSMg01-136C02
Chromosome11 (Build37)
Map Location 38,752,833 - 38,753,273
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136C02.T7 (MSMg01no136_c02.b1)MSMg01-136C02.TJ (MSMg01no136_c02.g1)
ACCAG342415AG342416
length694685
length of high quality
(start - end)
445 (57 - 501)400 (85 - 484)
definitionCHROMAT_FILE: MSMg01no136_c02.b1 PHD_FILE: MSMg01no136_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:25 2005CHROMAT_FILE: MSMg01no136_c02.g1 PHD_FILE: MSMg01no136_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTTTTTGNATTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAGCTTAAGTCTGCTTGGTCCTTTATAAATATTTC
TCATTCTCACATTCTCCTCTTTCCCCAATACCCAGTCTCTCCCCTATCCT
TCCCCCCCCCCATATTTCATTGTTTTCTTTTGTTTTTTTCTAACAAAATA
TTTTTATTTTTGCTTTGGGGATTTTGCATTATACACTCCTATCACATTTG
TCTCCCGGGCCATCTTTATACTCCTTTCAGAAAAAAATAAATTCCAGTTT
GTGTTATTTATATATTCGTTGGGGTATGGTCAAAGTCAGTGGCCTATTCC
CTAAACAGAGCTGAGCCCTTTCTGTCCTGCATCCCTGTCCATTATCTATA
TCTACTGTGAAGGGTGACATTCCCCACAACCCTATCACAGTTTTTAAGAG
ATCTCTCTGATCACTTCATGTCTAGACTTTCACAATTTGTTTTTGGGAAG
GGGATGAGGTGAAAGTTTTTTATCCCCCCAATCCTATTACATATCACTAA
TCAACCCACTGTTTCTCCCTATGTTACTCACCCTTCCTCTTTTTTTTTTT
AGCCTTTTACCCTCTAACATATCTAATTCTATTCATATCTATTCTTTTAT
ATGTTATATACTACCCCCTACCCTATATTTAATAAAACATTAAT
ATCTCTCATTTCCGATGATAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTCCCATCACTTC
TAATAAAGCCTGTCCTCTTATTCCCAAAGATAAAAAAATCATTCTTGGCT
CAATTGACCCTGATAACCTTGATATAGCTGTCTTTTGTGAGGCTGTGTCA
GTGCCTGGCAAATACAGAGGTCTATGCTCATAGTCATCTATTGGATGGAA
CACAGGGCCCCCAGGGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGA
GGTCTGCAACCCTATAGGTGGAACAACAATACCAACTATCCAGTACCCCC
AGCGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTTGGCC
ATCATTGGGAGGAGAGGCCCTTAGCCCCGCAAAGGGGAATGCCAGGGCCT
GGTAGCATGAGTGGGTGGGTTGGGGAGCAGGATAGGGGCAGGTTCTTTTT
TTTTTTCATCTTCCGATTTTTTTTTTTTCCTCTTCCTTTTTTATTTTCTC
TCTCCATTTAAACTTATTTTCTTTTTAATTTTTTTCCTTTCACCCTCTTT
ATTTCTCCTTTACCACTTTCCGTTTTCAATCCCCTATAAATAGTTTTCCC
ATAATCAACCTCCCCTCTCCCTTTTCCCCTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_c02.b1 MSMg01no136_c02.b1 CHROMAT_FILE:
MSMg01no136_c02.b1 PHD_FILE: MSMg01no136_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:25 2005
         (445 letters)



>mm_chr11_38752630_38753473
          Length = 844

 Score =  775 bits (401), Expect = 0.0
 Identities = 432/443 (97%), Gaps = 3/443 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagcttaagtctgcttggtcctttataaatatttctcattctcacattctcctc 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagcttaagtttgcttggtcctttataaatatttctcattctcacattctcctc 263

                                                                       
Query: 64  tttccccaatacccagtctctcccctatccttccccccccccatatttcattgttttctt 123
           ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||
Sbjct: 264 tttccccaatacccagtctctcccctatcctccccccccccc--atttcattgttttctt 321

                                                                       
Query: 124 ttg-tttttttctaacaaaatatttttatttttgctttggggattttgcattatacactc 182
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttgttttttttctaacaaaatatttttatttttgctttggggattttgcattatacactc 381

                                                                       
Query: 183 ctatcacatttgtctcccgggccatctttatactcctttcagaaaaaaataaattccagt 242
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 382 ctatcacatttgtctcccgggccatcttcatactcctttcagaaaaaaataaattccagt 441

                                                                       
Query: 243 ttgtgttatttatatattcgttggggtatggtcaaagtcagtggcctattccctaaacag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 442 ttgtgttatttatatattcgttggggtatggtcaaagtcagtggcctattctctaaacag 501

                                                                       
Query: 303 agctgagccctttctgtcctgcatccctgtccattatctatatctactgtgaagggtgac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agctgagccctttctgtcctgcatccctgtccattatctatatctactgtgaagggtgac 561

                                                                       
Query: 363 attccccacaaccctatcacagtttttaagagatctctctgatcacttcatgtctagact 422
           |||||||| ||  |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 562 attccccagaattctatcacagtttttaagagatctctctgatcacttcttgtctagact 621

                                  
Query: 423 ttcacaatttgtttttgggaagg 445
           |||||||||||||||||||||||
Sbjct: 622 ttcacaatttgtttttgggaagg 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 844
Length adjustment: 10
Effective length of query: 435
Effective length of database: 834
Effective search space:   362790
Effective search space used:   362790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)