MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-136I13
Chromosome	11 (Build37)
Map Location	53,282,898 - 53,283,502
singlet/doublet	singlet
Overlap gene	ENSMUSG00000049427
Upstream gene	LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1
Downstream gene	Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC667659 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667659
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	LOC667667 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667667
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100040523 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040523
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Fstl4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320027 MGI:2443199
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC623205 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623205
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 88 ESTs, 2 Proteins

name	Hspa4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15525 MGI:1342292
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zcchc10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67966 MGI:1196228
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aff4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93736 MGI:2136171
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040576 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040576
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Leap2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:259301 MGI:2672795
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Uqcrq (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22272 MGI:107807
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gdf9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14566 MGI:95692
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Shroom1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71774 MGI:1919024
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	ENSMUSG00000049427 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:432561 MGI:3642517
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Ankrd43 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237761 MGI:2687280
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC546500 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins

name	Sept8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20362 MGI:894310
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cycl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:547416 MGI:894272
definition	note : cyclin-like pseudo : _no_value

name	Kif3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16568 MGI:107689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16189 MGI:96556
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16163 MGI:96541
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667731 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667731
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 6 Proteins pseudo : _no_value

name	Rad50 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19360 MGI:109292
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16191 MGI:96557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Irf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16362 MGI:96590
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC622459 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622459
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs

name	Slc22a5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20520 MGI:1329012
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667762 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667762
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 ESTs, 3 Proteins pseudo : _no_value

name	Slc22a21 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56517 MGI:1929481
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc22a4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30805 MGI:1353479
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pdlim4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30794 MGI:1353470
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	P4ha2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18452 MGI:894286
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC623647 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623647
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Dbi-ps (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:260348
definition	note : acyl-CoA-binding protein ACBP pseudogene pseudo : _no_value

name	Csf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12981 MGI:1339752
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16187 MGI:96552
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acsl6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216739 MGI:894291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	4930404A10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74847 MGI:1922097
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 Proteins

name	LOC100041400 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041400
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 171 ESTs, 4 Proteins

name	LOC100041411 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041411
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Fnip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216742 MGI:2444668
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667659 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261882 GeneID:667659
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : hypothetical LOC667659 transcript_id : XM_991730.2

name	LOC100040523 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261884 GeneID:100040523
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to reproductive homeobox on X chromosome 8 transcript_id : XM_001474858.1

name	Fstl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57527847 GeneID:320027 MGI:2443199
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : follistatin-like 4 transcript_id : NM_177059.3

name	LOC623205 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94390082 GeneID:623205
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 88 ESTs, 2 Proteins product : similar to TATA box-binding protein-associated factor, RNA polymerase II, K, 18kD transcript_id : XM_887643.2

name	Hspa4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112293265 GeneID:15525 MGI:1342292
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock protein 4 transcript_id : NM_008300.3

name	Zcchc10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142359536 GeneID:67966 MGI:1196228
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, CCHC domain containing 10 transcript_id : NM_026479.3

name	Aff4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:17298671 GeneID:93736 MGI:2136171
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AF4/FMR2 family, member 4 transcript_id : NM_033565.1

name	Leap2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113374195 GeneID:259301 MGI:2672795
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : liver-expressed antimicrobial peptide 2 transcript_id : NM_153069.3

name	Uqcrq (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21539584 GeneID:22272 MGI:107807
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquinol-cytochrome c reductase, complex III subunit VII transcript_id : NM_025352.1

name	Gdf9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679982 GeneID:14566 MGI:95692
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : growth differentiation factor 9 transcript_id : NM_008110.1

name	Shroom1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125628647 GeneID:71774 MGI:1919024
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : shroom family member 1 transcript_id : NM_027917.2

name	Ankrd43 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125628645 GeneID:237761 MGI:2687280
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 43 transcript_id : NM_183173.2

name	LOC546500 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:63622470 GeneID:546500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins product : similar to RPL9 transcript_id : XM_621250.1

name	Sept8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930476 GeneID:20362 MGI:894310
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : septin 8 transcript_id : NM_033144.1

name	Kif3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124517729 GeneID:16568 MGI:107689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinesin family member 3A transcript_id : NM_008443.3

name	Il4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946583 GeneID:16189 MGI:96556
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 4 transcript_id : NM_021283.1

name	Il13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371356 GeneID:16163 MGI:96541
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 13 transcript_id : NM_008355.2

name	Rad50 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679608 GeneID:19360 MGI:109292
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAD50 homolog (S. cerevisiae) transcript_id : NM_009012.1

name	Il5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754335 GeneID:16191 MGI:96557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 5 transcript_id : NM_010558.1

name	Irf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680466 GeneID:16362 MGI:96590
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interferon regulatory factor 1 transcript_id : NM_008390.1

name	LOC622459 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261901 GeneID:622459
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs product : hypothetical protein LOC622459 transcript_id : XM_001476362.1

name	LOC622459 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261903 GeneID:622459
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical protein LOC622459, transcript variant 1 transcript_id : XM_899599.3

name	Slc22a5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981489 GeneID:20520 MGI:1329012
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 22 (organic cation transporter), member 5 transcript_id : NM_011396.2

name	Slc22a21 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130534 GeneID:56517 MGI:1929481
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 22 (organic cation transporter), member 21 transcript_id : NM_019723.2

name	Slc22a4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130537 GeneID:30805 MGI:1353479
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 22 (organic cation transporter), member 4 transcript_id : NM_019687.3

name	Pdlim4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347858 GeneID:30794 MGI:1353470
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PDZ and LIM domain 4 transcript_id : NM_019417.2

name	P4ha2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754969 GeneID:18452 MGI:894286
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide transcript_id : NM_011031.1

name	Csf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625657 GeneID:12981 MGI:1339752
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : colony stimulating factor 2 (granulocyte-macrophage) transcript_id : NM_009969.3

name	Il3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227228 GeneID:16187 MGI:96552
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 3 transcript_id : NM_010556.4

name	Acsl6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75992914 GeneID:216739 MGI:894291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA synthetase long-chain family member 6 transcript_id : NM_001033598.1

name	Acsl6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75992910 GeneID:216739 MGI:894291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA synthetase long-chain family member 6 transcript_id : NM_144823.4

name	Acsl6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75992912 GeneID:216739 MGI:894291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA synthetase long-chain family member 6 transcript_id : NM_001033597.1

name	Acsl6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75992916 GeneID:216739 MGI:894291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA synthetase long-chain family member 6 transcript_id : NM_001033599.1

name	4930404A10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390091 GeneID:74847 MGI:1922097
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 Proteins product : RIKEN cDNA 4930404A10 gene transcript_id : XM_484022.3

name	LOC100041400 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261906 GeneID:100041400
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 171 ESTs, 4 Proteins product : similar to oxidative stress responsive 1 transcript_id : XM_001476534.1

name	Fnip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55925633 GeneID:216742 MGI:2444668
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : folliculin interacting protein 1 transcript_id : NM_173753.3

name	LOC667659 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261883 GeneID:667659
definition	codon_start : 1 product : hypothetical protein protein_id : XP_996824.2

name	LOC100040523 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261885 GeneID:100040523
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474908.1

name	Fstl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57527848 CCDS:CCDS24673.1 GeneID:320027 MGI:2443199
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 note : m-D/Bsp120I 1-1 product : follistatin-like 4 protein_id : NP_796033.2

name	LOC623205 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:82934547 GeneID:623205
definition	codon_start : 1 product : hypothetical protein protein_id : XP_892736.1

name	Hspa4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112293266 CCDS:CCDS24674.1 GeneID:15525 MGI:1342292
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 note : heat shock protein, 110 kDa; heat shock 70 kDa protein 4 product : heat shock protein 4 protein_id : NP_032326.3

name	Zcchc10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754058 CCDS:CCDS24675.1 GeneID:67966 MGI:1196228
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger, CCHC domain containing 10 protein_id : NP_080755.2

name	Aff4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17298672 CCDS:CCDS24676.1 GeneID:93736 MGI:2136171
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007286 - spermatid development [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : ALL1 fused gene from 5q31; lymphoid nuclear protein related to AF4-like product : AF4/FMR2 family, member 4 protein_id : NP_291043.1

name	Leap2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346471 GeneID:259301 MGI:2672795
definition	GO_process : GO:0042742 - defense response to bacterium [Evidence IEA]; GO:0051707 - response to other organism [Evidence IEA] codon_start : 1 product : liver-expressed antimicrobial peptide 2 protein_id : NP_694709.1

name	Uqcrq (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21539585 GeneID:22272 MGI:107807
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005746 - mitochondrial electron transport chain [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : complex III subunit VII; ubiquinol-cytochrome c reductase binding protein; low molecular mass ubiquinone-binding protein (Qpc-pending) product : low molecular mass ubiquinone-binding protein protein_id : NP_079628.1

name	Gdf9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679983 CCDS:CCDS24679.1 GeneID:14566 MGI:95692
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : growth differentiation factor 9 protein_id : NP_032136.1

name	Shroom1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125628648 CCDS:CCDS24680.1 GeneID:71774 MGI:1919024
definition	codon_start : 1 product : apical protein 2 protein_id : NP_082193.2

name	Ankrd43 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125628646 CCDS:CCDS24681.1 GeneID:237761 MGI:2687280
definition	codon_start : 1 product : ankyrin repeat domain 43 protein_id : NP_898996.2

name	LOC546500 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:63622471 GeneID:546500
definition	codon_start : 1 product : similar to RPL9 protein_id : XP_621250.1

name	Sept8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930477 GeneID:20362 MGI:894310
definition	GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA] codon_start : 1 note : septin-like product : septin 8 protein_id : NP_149156.1

name	Kif3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328138 GeneID:16568 MGI:107689
definition	GO_component : GO:0005871 - kinesin complex [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005875 - microtubule associated complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007368 - determination of left/right symmetry [Evidence IMP]; GO:0009953 - dorsal/ventral pattern formation [Evidence IMP]; GO:0001822 - kidney development [Evidence IMP]; GO:0007018 - microtubule-based movement [Evidence IEA] codon_start : 1 note : kinesin-II subunit; kinesin family-like; N-4 kinesin product : kinesin family member 3A protein_id : NP_032469.2

name	Il4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946584 CCDS:CCDS24682.1 GeneID:16189 MGI:96556
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IDA]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005126 - hematopoietin/interferon-class (D200-domain) cytokine receptor binding [Evidence IEA]; GO:0005136 - interleukin-4 receptor binding [Evidence TAS] [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0042113 - B cell activation [Evidence IEA]; GO:0008203 - cholesterol metabolism [Evidence TAS]; GO:0006955 - immune response [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IDA]; GO:0045671 - negative regulation of osteoclast differentiation [Evidence IDA]; GO:0042104 - positive regulation of activated T cell proliferation [Evidence IDA]; GO:0030890 - positive regulation of B cell proliferation [Evidence IDA]; GO:0048295 - positive regulation of isotype switching to IgE isotypes [Evidence IDA]; GO:0048304 - positive regulation of isotype switching to IgG isotypes [Evidence IDA]; GO:0045348 - positive regulation of MHC class II biosynthesis [Evidence IDA]; GO:0042102 - positive regulation of T cell proliferation [Evidence IDA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0042523 - positive regulation of tyrosine phosphorylation of Stat5 protein [Evidence IDA]; GO:0050776 - regulation of immune response [Evidence IDA]; GO:0042325 - regulation of phosphorylation [Evidence IDA] codon_start : 1 product : interleukin 4 protein_id : NP_067258.1

name	Il13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680403 CCDS:CCDS24683.1 GeneID:16163 MGI:96541
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0005126 - hematopoietin/interferon-class (D200-domain) cytokine receptor binding [Evidence IEA]; GO:0005144 - interleukin-13 receptor binding [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA] codon_start : 1 product : interleukin 13 protein_id : NP_032381.1

name	Rad50 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679609 CCDS:CCDS24684.1 GeneID:19360 MGI:109292
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000781 - chromosome, telomeric region [Evidence IEA]; GO:0030870 - Mre11 complex [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016887 - ATPase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051276 - chromosome organization and biogenesis [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0000723 - telomere maintenance [Evidence IEA] codon_start : 1 exception : mismatches in translation function : DNA repair protein product : RAD50 homolog protein_id : NP_033038.1

name	Il5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754336 CCDS:CCDS24685.1 GeneID:16191 MGI:96557
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IDA]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005137 - interleukin-5 receptor binding [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0050731 - positive regulation of peptidyl-tyrosine phosphorylation [Evidence IDA] codon_start : 1 product : interleukin 5 protein_id : NP_034688.1

name	Irf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680467 CCDS:CCDS24686.1 GeneID:16362 MGI:96590
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0045084 - positive regulation of interleukin-12 biosynthesis [Evidence IMP] [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : interferon regulatory factor 1 protein_id : NP_032416.1

name	LOC622459 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261902 GeneID:622459
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476412.1

name	LOC622459 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:82934505 GeneID:622459
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_904692.1

name	Slc22a5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755540 CCDS:CCDS24687.1 GeneID:20520 MGI:1329012
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005386 - carrier activity [Evidence IEA]; GO:0015075 - ion transporter activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : Lstp-like; juvenile visceral steatosis product : solute carrier family 22 member 5 protein_id : NP_035526.1

name	Slc22a21 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790131 CCDS:CCDS24688.1 GeneID:56517 MGI:1929481
definition	GO_component : GO:0031231 - intrinsic to peroxisomal membrane [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : solute carrier family 22 (organic cation transporter), member 9 product : solute carrier family 22 (organic cation transporter), member 21 protein_id : NP_062697.1

name	Slc22a4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790129 CCDS:CCDS24689.1 GeneID:30805 MGI:1353479
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006814 - sodium ion transport [Evidence IEA] codon_start : 1 note : organic cation transporter 1; LSTP-Like 2; solute carrier family (organic cation transporter), member 4 product : solute carrier family 22 member 4 protein_id : NP_062661.1

name	Pdlim4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9507053 CCDS:CCDS24690.1 GeneID:30794 MGI:1353470
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : reversion induced LIM product : PDZ and LIM domain 4 protein_id : NP_062290.1

name	P4ha2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754970 CCDS:CCDS24691.1 GeneID:18452 MGI:894286
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0031418 - L-ascorbic acid binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Evidence IEA]; GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [Evidence IEA]; GO:0004656 - procollagen-proline 4-dioxygenase activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0018401 - peptidyl-proline hydroxylation to 4-hydroxy-L-proline [Evidence IDA]; GO:0019538 - protein metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide protein_id : NP_035161.1

name	Csf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625658 CCDS:CCDS24692.1 GeneID:12981 MGI:1339752
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IDA]; GO:0005129 - granulocyte macrophage colony-stimulating factor receptor binding [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0043011 - myeloid dendritic cell differentiation [Evidence IDA]; GO:0008284 - positive regulation of cell proliferation [Evidence IDA]; GO:0045885 - positive regulation of survival gene product activity [Evidence IDA] codon_start : 1 note : put. GM-CSF product : colony stimulating factor 2 protein_id : NP_034099.2

name	Il3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982791 CCDS:CCDS24693.1 GeneID:16187 MGI:96552
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IDA]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005135 - interleukin-3 receptor binding [Evidence IEA] [Evidence ISS] GO_process : GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence IDA]; GO:0006955 - immune response [Evidence IEA]; GO:0008284 - positive regulation of cell proliferation [Evidence IDA]; GO:0050731 - positive regulation of peptidyl-tyrosine phosphorylation [Evidence IDA]; GO:0045885 - positive regulation of survival gene product activity [Evidence IDA] codon_start : 1 product : interleukin 3 protein_id : NP_034686.2

name	Acsl6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75992911 CCDS:CCDS24695.1 GeneID:216739 MGI:894291
definition	EC_number : 6.2.1.3 GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004467 - long-chain-fatty-acid-CoA ligase activity [Evidence IDA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0007405 - neuroblast proliferation [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; long-chain acyl-CoA synthetase; Lacs-like; long-chain acyl-CoA synthetase-like; fatty acid Coenzyme A ligase, long chain 6 product : acyl-CoA synthetase long-chain family member 6 isoform 1 protein_id : NP_659072.3

name	Acsl6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75992913 CCDS:CCDS24694.1 GeneID:216739 MGI:894291
definition	EC_number : 6.2.1.3 GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004467 - long-chain-fatty-acid-CoA ligase activity [Evidence IDA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0007405 - neuroblast proliferation [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; long-chain acyl-CoA synthetase; Lacs-like; long-chain acyl-CoA synthetase-like; fatty acid Coenzyme A ligase, long chain 6 product : acyl-CoA synthetase long-chain family member 6 isoform 2 protein_id : NP_001028769.1

name	Acsl6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75992915 CCDS:CCDS24696.1 GeneID:216739 MGI:894291
definition	EC_number : 6.2.1.3 GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004467 - long-chain-fatty-acid-CoA ligase activity [Evidence IDA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0007405 - neuroblast proliferation [Evidence IDA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; long-chain acyl-CoA synthetase; Lacs-like; long-chain acyl-CoA synthetase-like; fatty acid Coenzyme A ligase, long chain 6 product : acyl-CoA synthetase long-chain family member 6 isoform 3 protein_id : NP_001028770.1

name	Acsl6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75992917 CCDS:CCDS24697.1 GeneID:216739 MGI:894291
definition	EC_number : 6.2.1.3 GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004467 - long-chain-fatty-acid-CoA ligase activity [Evidence IDA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0007405 - neuroblast proliferation [Evidence IDA] codon_start : 1 note : isoform 4 is encoded by transcript variant 4; long-chain acyl-CoA synthetase; Lacs-like; long-chain acyl-CoA synthetase-like; fatty acid Coenzyme A ligase, long chain 6 product : acyl-CoA synthetase long-chain family member 6 isoform 4 protein_id : NP_001028771.1

name	4930404A10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94390092 GeneID:74847 MGI:1922097
definition	codon_start : 1 product : hypothetical protein LOC74847 protein_id : XP_484022.2

name	LOC100041400 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261907 GeneID:100041400
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476584.1

name	Fnip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55925634 CCDS:CCDS24698.1 GeneID:216742 MGI:2444668
definition	codon_start : 1 product : folliculin interacting protein 1 protein_id : NP_776114.2

name	LOC667667 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667667
definition	number : 1 pseudo : _no_value

name	LOC100040576 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040576
definition	number : 1 pseudo : _no_value

name	LOC100040576 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040576
definition	number : 2 pseudo : _no_value

name	LOC623647 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623647
definition	number : 1 pseudo : _no_value

name	LOC100041411 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041411
definition	number : 1 pseudo : _no_value

name	Cycl (CDS detail)
type	misc_feature
link	vega ensembl
xref
definition	note : GRAIL 2 excellent exon, frame 1 pseudo : _no_value

name	ENSMUSG00000049427 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149261886 GeneID:432561 MGI:3642517
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : predicted gene, ENSMUSG00000049427 transcript_id : XR_035252.1

name	LOC667731 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:94390089 GeneID:667731
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 6 Proteins product : similar to ribosomal protein S2 pseudo : _no_value transcript_id : XR_002067.1

name	LOC667762 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261904 GeneID:667762
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 ESTs, 3 Proteins product : similar to ribosomal protein L27A pseudo : _no_value transcript_id : XR_032705.1

clone name	MSMg01-394A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492B03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-049N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-127O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194N08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-543F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212C11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-348L04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-492B03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-321K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349I18
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-136I13.T7 (MSMg01no136_i13.b1)	MSMg01-136I13.TJ (MSMg01no136_i13.g1)
ACC	AG342708	AG342709
length	696	694
length of high quality (start - end)	637 (54 - 690)	607 (82 - 688)
definition	CHROMAT_FILE: MSMg01no136_i13.b1 PHD_FILE: MSMg01no136_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:57 2005	CHROMAT_FILE: MSMg01no136_i13.g1 PHD_FILE: MSMg01no136_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:57 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CCNNNNNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXCGCGGAATTCTCATAGGATATCCCATCATAACTGAATTTCTTACAGA AAGTAAAAAAGAGAAGGCTGCTTTCTTTCTATCCTCCTCCTTTTTTTTTT TTTTTTTTTTTTTTTGAGACAGGGTCTCATTACATAGCCCAGGCTACCCT AACTTCTTATGTAGTCCAGGTTGCCTTCAAACTCTCCATCTTCCTACCTC AGCCTACCAAGTCCTGGAATGATGGGTGTACACCACAGTAAGTTTCTGGG TTTTTGTTTTGTTTTGTTTTTTTGTTTTTGGTTTTTCGAGACAGGGTTTC TCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC TCGAACTCAGAAATCCGCCTGCCTCTACCTCCCAAGTGCTGGGATTAAAG GCGTGTGCCACCACGCCCTACTCACAGTAAGTTTCTGAATGACTCACTTG GTAGTCAAATAAAGACAGCCATTTACTGACGCAGAGTTAATCATTAAACC ATACTAGATTGCAACAGCCAGAAAATACATGTCGAGCATGATATTCTTAT TAACGGCAGGCCAAATCTAAAAGTGTCCTGGCAGAGAAGTGTAATGGGCA TTTGAATGAGATATTTGCTTTGAAACTGCTGCTCTTTGGCTATAAA	CCCCNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGTGCCCTCAAAAGAA ACCACCGATTGGACAGGATAAAAACTGAGGCAAGAACGAGACAAGATCAG GCTGGACCCAAGGACCAGCTCTGGAACTGTGACTCTCAAAAACTGTCAGG GTTGAGCACGGAAATCTCGTTATTCCCCCTTCGAAAAATCTGGCGCAGAA CCAAGGTTTGTTCTAGCCTGAAGATGGCAGTCGTCCCTATGCCCACCCAT AAGCCAGAAATGCTTTGAAATACACACTTTCCATTGGCTGAGTGGACAGT GTTAGGTGTGTTTCTAAGAATATCATAACAGAAGCATGATGTTTCAAATG GGAATTGCGTAGGGCAACAGGCACAGATCAGCAGCTTCCACGCAGAAGGC TCCTCCAAGAGACCTTAGTGCCCGGACCCTGCCCACAGGGTTCAAGGCGA CAAAAGGAAAGCATAACGTTAGACCTGCAATGGCCTCAGCAGGAGCCCCA TATGCGTTTTATAAACTATCACAATGAGAACATTGTTCTGTGCTCAATAG CCCGACTGTTGCAACTGATGCCTTTAGTATGAATAGGGCCATTTACAGTT CTCAGCCATTTGCACTTAGTGACAATACACATCAGAAAACAAGA
quality values	Open. Hide. 3 3 0 0 0 0 0 3 6 6 10 9 8 8 10 10 12 22 22 16 16 14 12 15 28 21 19 9 9 9 21 21 47 30 30 31 31 31 29 23 22 9 9 9 9 9 9 18 15 22 22 20 20 24 25 36 31 36 35 35 36 36 42 50 50 47 47 47 37 37 22 22 11 14 20 29 29 47 47 47 68 68 68 68 68 68 51 51 51 68 68 68 68 68 51 50 50 50 50 50 50 51 50 50 50 51 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 50 43 35 35 35 43 43 47 43 43 43 35 43 43 57 57 57 52 52 43 43 39 39 39 57 57 52 52 52 57 52 57 57 57 57 57 57 57 57 57 43 43 52 57 43 43 35 39 31 39 39 43 57 57 62 52 43 43 35 35 35 44 44 52 52 62 43 43 35 43 43 62 43 62 45 52 52 62 62 62 62 52 52 52 62 62 45 52 52 43 44 43 43 39 62 62 52 52 52 62 62 62 62 62 43 43 33 33 35 43 43 43 43 35 35 35 43 43 52 52 52 43 43 43 52 62 62 62 62 62 62 52 52 43 44 43 52 52 62 39 43 23 23 23 39 39 14 14 14 39 39 17 17 17 41 41 68 43 43 23 23 23 43 43 62 62 39 43 43 62 44 62 43 43 39 43 43 43 43 62 62 62 62 62 62 43 52 43 43 26 26 26 43 43 52 52 62 62 62 62 52 43 43 27 27 31 43 44 62 62 62 62 52 52 52 52 52 62 44 44 26 26 26 35 35 43 43 43 43 52 62 45 62 43 43 35 43 43 52 52 43 43 41 41 20 35 35 44 44 52 43 43 43 43 43 43 27 31 31 43 31 27 27 43 35 35 35 44 44 57 57 43 43 33 33 33 44 43 57 52 57 52 57 57 43 43 33 33 27 28 20 20 20 28 28 43 43 52 52 52 52 52 52 50 50 38 38 35 35 33 38 38 52 43 43 50 50 52 52 52 52 44 43 46 42 43 33 33 33 43 35 35 35 43 34 40 27 36 33 35 35 42 42 42 43 43 43 47 44 43 43 35 35 37 42 43 44 42 44 43 43 43 43 41 41 35 30 30 20 20 20 24 24 32 37 37 43 43 43 43 57 48 54 43 43 36 36 36 43 34 34 20 20 20 28 28 23 23 23 37 32 48 37 37 28 28 28 37 37 41 40 37 37 37 28 28 14 14 14 28 28 31 31 25 30 25 28 28 32 34 39 43 43 43 43 43 39 37 39 37 34 28 28 24 30 24 22 20 31 26 37 37 36 35 37 35 34 32 37 36 36 39 32 34 30 24 17 24 19 23 18 25 25 28 28 28 23 28 28 34 34 43 39 39 39 43 47 47 47 40 39 37 26 23 14 14 28 28 28 37 34 34 28 28 28 37 37 48 46 46 43 30 30 17 13 13 18 18 25 32 30 43 23 24 15 15 15 22 13 10 8 8	Open. Hide. 7 7 7 3 0 0 0 3 7 7 8 10 11 10 10 13 15 14 9 9 9 18 17 32 29 29 37 37 33 32 39 39 39 44 59 27 21 8 8 7 8 8 9 9 9 10 15 22 19 30 28 28 37 33 33 36 36 50 36 36 50 50 50 44 43 40 17 20 19 19 21 29 26 28 37 26 42 40 40 41 40 54 68 51 51 51 51 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 68 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 50 50 50 51 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 68 68 68 68 68 68 62 62 62 68 68 68 68 68 68 68 62 62 57 68 68 68 68 68 68 68 68 57 68 68 68 68 59 59 59 59 59 59 59 68 57 57 57 57 57 68 68 68 68 68 57 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 57 52 52 52 52 52 50 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 57 57 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 26 20 12 12 12 20 23 39 41 42 50 50 50 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 57 57 57 68 68 68 68 68 68 68 68 54 57 57 57 59 59 59 59 68 54 57 57 57 57 57 57 57 57 68 68 68 68 59 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 57 57 57 57 57 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 59 59 68 68 68 59 59 59 59 57 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 59 68 68 59 59 54 54 54 57 57 57 57 46 46 43 47 47 59 48 57 54 48 48 57 57 57 57 48 48 48 50 57 57 47 47 42 42 42 47 39 57 48 43 43 43 47 47 59 46 46 41 47 43 43 41 37 41 39 39 41 40 39 39 47 47 47 39 39 43 37 37 43 43 43 48 57 59 59 48 48 48 47 47 41 41 39 39 39 39 37 41 43 59 41 41 46 47 39 39 14 9 9 9 9 19 22 25 16 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no136_i13.g1 MSMg01no136_i13.g1 CHROMAT_FILE:
MSMg01no136_i13.g1 PHD_FILE: MSMg01no136_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:57 2005
         (607 letters)



>mm_chr11_53282698_53283702
          Length = 1005

 Score = 1116 bits (577), Expect = 0.0
 Identities = 599/607 (98%), Gaps = 2/607 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagtgccctcaaaagaaaccaccgattggacaggataaaaactgaggcaagaacgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttgagtgccctcaaaagaaaccaccgattggacaggataaaaactgaggcaagaacgaga 746

                                                                       
Query: 61  caagatcaggctggacccaaggaccagctctggaactgtgactctcaaaaactgtcaggg 120
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 745 caagatcaggctggacccaaggaccagctctggaactgtga--ctcaaaaactgtcaggg 688

                                                                       
Query: 121 ttgagcacggaaatctcgttattcccccttcgaaaaatctggcgcagaaccaaggtttgt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttgagcacggaaatctcgttatttccccttcgaaaaatctggcgcagaaccaaggtttgt 628

                                                                       
Query: 181 tctagcctgaagatggcagtcgtccctatgcccacccataagccagaaatgctttgaaat 240
           |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 627 tctagcctaaagatggcagtcgtccctatacccacccataagccagaaatgctttgaaat 568

                                                                       
Query: 241 acacactttccattggctgagtggacagtgttaggtgtgtttctaagaatatcataacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 acacactttccattggctgagtggacagtgttaggtgtgtttctaagaatatcataacag 508

                                                                       
Query: 301 aagcatgatgtttcaaatgggaattgcgtagggcaacaggcacagatcagcagcttccac 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 507 aagcatgatgtttcaaatgggaattgcgtagggcaacaggcagagatcagcagcttccac 448

                                                                       
Query: 361 gcagaaggctcctccaagagaccttagtgcccggaccctgcccacagggttcaaggcgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcagaaggctcctccaagagaccttagtgcccggaccctgcccacagggttcaaggcgac 388

                                                                       
Query: 421 aaaaggaaagcataacgttagacctgcaatggcctcagcaggagccccatatgcgtttta 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acaaggaaagcataacgttagacctgcaatggcctcagcaggagccccatatgcgtttta 328

                                                                       
Query: 481 taaactatcacaatgagaacattgttctgtgctcaatagcccgactgttgcaactgatgc 540
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taaaatatcacaatgagaacattgttctgtgctcaatagcccgactgttgcaactgatgc 268

                                                                       
Query: 541 ctttagtatgaatagggccatttacagttctcagccatttgcacttagtgacaatacaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctttagtatgaatagggccatttacagttctcagccatttgcacttagtgacaatacaca 208

                  
Query: 601 tcagaaa 607
           |||||||
Sbjct: 207 tcagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1005
Length adjustment: 10
Effective length of query: 597
Effective length of database: 995
Effective search space:   594015
Effective search space used:   594015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information