BAC Information

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BAC

Clone NameMSMg01-136K23
Chromosome11 (Build37)
Map Location 98,559,603 - 98,560,213
singlet/doubletsinglet
Overlap genenone
Upstream genePcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3
Downstream geneCsf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136K23.T7 (MSMg01no136_k23.b1)MSMg01-136K23.TJ (MSMg01no136_k23.g1)
ACCAG342821AG342822
length702703
length of high quality
(start - end)		650 (53 - 702)616 (81 - 696)
definitionCHROMAT_FILE: MSMg01no136_k23.b1 PHD_FILE: MSMg01no136_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:09 2005CHROMAT_FILE: MSMg01no136_k23.g1 PHD_FILE: MSMg01no136_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCNCCAATCATAATTTGCGGCGCTAAACGACTCCTATAGGTCCCAAATC
CGCGGAATTCTCTACTACTTACTCAAATTTTAAAATTTGTTTTTGAACAA
GGCTTCCTATAGCCTTGAACTTGCTATGTAGCTGACGATGACCCGGAACT
CCTGCTGCACGCACCACACCTGTCTCTAACCTCTCAAGACAGATATTAAA
ACCAAGCCGCAACACAACTGGCCAAACATATACAATCTGCAGAAAAAAAA
CAATTTCATCTTTATTTCTCATTTTAAAAAAGTGGTATGTGTGTCTACGT
GAGTGCAGGACACACATGTGGATGTCCCCAGCATTCAGGGTGTTGCTGGA
TCCTCTGGATTTGGAGTCAGAGGCAGTTGTGAGCCACATCTGACAGTGTT
AGGAACTTGGAACCTATAAAGGGCTACACATTAAGACCTTGTCTCAAAAT
TCATCAAGTAGGGGCCAGTGAGGTGGCTAAACAGTGCTTGTCCCTCAACA
ATGCAAATGACCTGAGTTGATCCTTGGAGCCCACATAAATGTAGGAGAAA
ACTGAATCTATACATTCGTCCTCCCCTCCACCCATGCAGTGGCATCCACA
CCCATACCACCACCACCACCACCACCACCTCCTCCTCCTCTTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTTCTTCTCTCTCTCTCTCTCTCTCTCTCT
CT

GAAANNCCGATGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGTC
CTATAATTCAAGAGCTTTGCTTCCCTCTGTCTCCTGGGATTAAAAGCATG
CACCACCAGCCTCCAGCTCAAGGTTCTTACAATAACATGGAGGAGGAGTT
ATTAGAGGCATGGGTAACTTGCTATGGCTACTGAAGAAAAAGTCTCTTCT
TTCCCCAGTGACCATAAACTGCTTATAAATCCCCCCCCAGGTGGGTAGGG
GCTCACAGGCCCAGTCTCCTGTAGGAAACCATCCATCACACCAGCTGTAA
GCTCCAGTACAATGGCCGTAGCCACGCCTTTTTCAAGAAATCTGCTGATG
ATGAGGTGTGGCGGCGGCAGCACAGCCCCTTCCTCCAGCCCTGCATTCTT
TCTGTTCTTGTCCACGGTGCTCGCTGGGCCGTGATAGGGTGTTACAGCTC
TCTCACTAATAGCTAAGCATCCAGCAGTCACTTCTCAGCGCTCTGACCAC
GACAAAAAGACGAGTCTCTGACCAAAGCTGACAAGCTATGACAGTAATAA
ACATAATTATTCAGATGGCAACTGGACAAGCGCATCCAACTATCAGAACA
GCAGCATAGCTTCCCTACTGGGTCCCAGGACTTCCCACACATAAACACCG
ACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_k23.g1 MSMg01no136_k23.g1 CHROMAT_FILE:
MSMg01no136_k23.g1 PHD_FILE: MSMg01no136_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:09 2005
         (616 letters)



>mm_chr11_98559403_98560415
          Length = 1013

 Score = 1081 bits (559), Expect = 0.0
 Identities = 601/617 (97%), Gaps = 7/617 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaccaggctgtcctataattcaagagctttgcttccctctgtctcctgggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagaccaggctgtcctataattcaagagctttgcttccctctgtctcctgggat 260

                                                                       
Query: 61  taaaagcatgcaccaccagcctccagctcaaggttcttacaataacatggaggaggagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaagcatgcaccaccagcctccagctcaaggttcttacaataacatggaggaggagtt 320

                                                                       
Query: 121 attagaggcatgggtaacttgctatggctactgaagaaaaagtctcttctttccccagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attagaggcatgggtaacttgctatggctactgaagaaaaagtctcttctttccccagtg 380

                                                                       
Query: 181 accataaactgcttataaatccccccccaggtgggtaggggctcacaggcccagtctcct 240
           ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 accataaactgcttataaat--ccccccaggggggtaggggctcacaggcccagtctcct 438

                                                                       
Query: 241 gtaggaaaccatccatcacaccagctgtaagctccagtacaatggccgtagccacgcctt 300
            ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
Sbjct: 439 ataggaaaccatccatcaca-cagctgtaagcttcagtacaatggccgtagccacgccgt 497

                                                                       
Query: 301 tttcaagaaatctgctgatgatgaggtgtggcggcggcagcacagccccttcctccagcc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 498 tttcaagaaatctgctgatgatgaggtgtggcggcggcagcacagccccttcctccggcc 557

                                                                       
Query: 361 ctgcattctttctgttcttgtccacggtgctcgctgggccgtgatagggtgttacagctc 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 558 ctgcattctttctgttcttgtccacggtcctcgctgggccgtgatagggtgttacagctc 617

                                                                       
Query: 421 tctcactaatagctaagcatccagcagtcacttctcagcgctctgaccacgacaaaaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 618 tctcactaatagctaagcatccagcagtcacttctcagcgctctgaccatgacaaaaaga 677

                                                                       
Query: 481 cgagtctctgaccaaagctgacaagctatgacagtaataaacataattattcagatggca 540
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 678 cgagtctctgaccaaagctgacaagctatgacagtaataaacat---tattcagatggca 734

                                                                       
Query: 541 actggacaagcgcatccaa-ctatcagaacagcagcatagcttccctactgggtcccagg 599
           ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 735 actggacaagcgcatcctatctatcagaacagcagtatagcttccctactgggtcccagg 794

                            
Query: 600 acttcccacacataaac 616
           |||||||||||||||||
Sbjct: 795 acttcccacacataaac 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1013
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1003
Effective search space:   607818
Effective search space used:   607818
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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