Query= MSMg01no136_l06.b1 MSMg01no136_l06.b1 CHROMAT_FILE:
MSMg01no136_l06.b1 PHD_FILE: MSMg01no136_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:10 2005
(659 letters)
>mm_chr11_11699915_11700974
Length = 1060
Score = 1205 bits (623), Expect = 0.0
Identities = 647/655 (98%), Gaps = 1/655 (0%)
Strand = Plus / Minus
Query: 6 gaattcaaattattcctttagtctggtaataataaactttgttagtgtagtattattatt 65
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gaattcaaattagaactttagtctggtaataataaactttgttagtgtagtattattatt 801
Query: 66 gcttacatttgaaacagcattgcattcttgacttagagttaagatcttaccaaaagctag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gcttacatttgaaacagcattgcattcttgacttagagttaagatcttaccaaaagctag 741
Query: 126 agtgaaagcaacagggagtaaactaccgtaacccgtgctggcttgtaacttgttttgtgg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agtgaaagcaacagggagtaaactaccgtaacccgtgctggcttgtaacttgttttgtgg 681
Query: 186 gctttttttctattaaaattaactaataaaaacatgttagaaatagcaagatgtaatctt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gctttttttctattaaaattaactaataaaaacatgttagaaatagcaagatgtaatctt 621
Query: 246 gtctgagggatgtagcctgcctcaaaagataagtgtggcttttttcaagggatctggaaa 305
|| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtatcaggcatgtagcctgcctcaaaagataagtgtggcttttttcaagggatctggaaa 561
Query: 306 gttttctattattgttttgtctgataattcttaagagcctatttcaaactaaatattttt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gttttctattattgttttgtctgataattcttaagagcctatttcaaactaaatattttt 501
Query: 366 aaattaaagagaataaaagttgttagtttgttaccattttgatggagttgcttcattttg 425
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 aaattaaagagaataaaagttgttagtttgttaccattttgacggagttgcttcattttg 441
Query: 426 ctataacttcaaattatttgttttaaacagtcctgtatacaacatatatgtatatgattt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctataacttcaaattatttgttttaaacagtcctgtatacaacatatatgtatatgattt 381
Query: 486 tactatgcttttgtagtctgtttgtttttccccttcaactggtatgcagccatggtggca 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tactatgcttttgtagtctgtttgtttttccccttcaactggtatgcagccatggtggca 321
Query: 546 tgaagcattctccctgcatgagtttccacacagcagtgatattgcgggtctgtgccacca 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgaagcattctccctgcatgagtttccacacagcagtgatattgcgggtctgtgccacca 261
Query: 606 tgcacagttagccagctcctttgcttt-aagttcagcatcattttgagtgctatc 659
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 260 tgcacagttagccagctcctttgctttaaagttcagcatcattttgagtgctatc 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space: 681450
Effective search space used: 681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_l06.g1 MSMg01no136_l06.g1 CHROMAT_FILE:
MSMg01no136_l06.g1 PHD_FILE: MSMg01no136_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:10 2005
(627 letters)
>mm_chr11_11546462_11547491
Length = 1030
Score = 1141 bits (590), Expect = 0.0
Identities = 619/630 (98%), Gaps = 3/630 (0%)
Strand = Plus / Plus
Query: 1 aagaaaaaaattgtttctctctcttataatggtaattgcttagatgagttattaaatgat 60
||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 aagaaaaaaatggtttttctctcttataatggtaattacttagatgagttattaaatgat 260
Query: 61 gttactttgcaggttcggaaataaaatgaacatctatattcaattctaagctaattttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttactttgcaggttcggaaataaaatgaacatctatattcaattctaagctaattttaa 320
Query: 121 gtaattgagttttcaccactagtcttttaatatctgtttgtttgggaaatagtgtattgt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaattgagttttcaccattagtcttttaatatctgtttgtttgggaaatagtgtattgt 380
Query: 181 taaatttctccgagagtcttctaaagaatgcttgtgctgccaagtgccccaaatgctagg 240
||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 taagtttctccgacagtcttctaaagaatgcttgtgctgccaagtgccccaaatactagg 440
Query: 241 atacttcttattcttgcctggttgctttgcacttatttcttggtctagtgaaacaaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacttcttattcttgcctggttgctttgcacttatttcttggtctagtgaaacaaattt 500
Query: 301 g---caccatccctaatagtttagatgagcaacatcatcttaggtgaatgacattatctt 357
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgcaccatccctaatagtttagatgagcaacatcatcttaggtgaatgacattatctt 560
Query: 358 cttatgtgattaatgtcatattctatgactgactctccaggaaatgattcctcattgttc 417
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttatgtgattaatgtcgtattctatgactgactctccaggaaatgattcctcattgttc 620
Query: 418 acaaatggccagcagatcacaatgtagctctattttgcactacacatttatttctagtat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaaatggccagcagatcacaatgtagctctattttgcactacacatttatttctagtat 680
Query: 478 tttctcacatgttctgcttcagggcagagttgtgaagtattaatagttatacttttgtga 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttctcacatgttctgcttcagggcagagttgtgaagtattaatagttatacttttgtga 740
Query: 538 ataaccaatttatttatatttccccttcaatgttgttgttactactgtcatagtaataaa 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataaccaatttatttatatttccccttcaatgttgttgttactactgtcatagtaataaa 800
Query: 598 aatgtgtcaaatttctactgctgtatttct 627
||||||||||||||||||||||||||||||
Sbjct: 801 aatgtgtcaaatttctactgctgtatttct 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1030
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1020
Effective search space: 629340
Effective search space used: 629340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
