BAC Information

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BAC

Clone NameMSMg01-137B17
Chromosome11 (Build37)
Map Location 93,759,375 - 93,759,960
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039286, Car10, LOC629636, Utp18
Downstream geneMbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137B17.T7 (MSMg01no137_b17.b1)MSMg01-137B17.TJ (MSMg01no137_b17.g1)
ACCAG343124AG343125
length742739
length of high quality
(start - end)
674 (41 - 714)623 (68 - 690)
definitionCHROMAT_FILE: MSMg01no137_b17.b1 PHD_FILE: MSMg01no137_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:41 2005CHROMAT_FILE: MSMg01no137_b17.g1 PHD_FILE: MSMg01no137_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACCTGTTGCATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTG
CAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAT
TGGACATAGTACTACCGGTAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACGGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGA
TGGACCTGGAGGGTATCATCCTGAGTGAGGTAACACATTCACAAAGGAAC
TCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGA
TACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAAA
TGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAGACAACCATGATTACAAGACAGAAAAACCC
TGTCTTGAAAAACCAAAAATTGCCTTAAAAAAAAAAAAAAGAAAAAAAAA
AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGGAAGGATGGGAGCTACAGCT
CAGCTGGTAGAGTGCTTGTTTAGAAGACTGAAGCCCTGGGTCTGACTGAT
CCTTGAAAAGCATAAACTGGTGTTGTGTCACATGTCTGTAATCTCAGCAT
TTGGGAGGAAAAATAGGGCATCAGAAGTTCATCATTATCCTTAAGGATGA
ATCAGACCCTGTCTCAACCACAACCAACTTTACTTCTGAGCTTTTTTAGA
GAAACGAGACACACACACTTACTACTTCAGGAAATCATGAATCCACACTT
TTACTTCCAATCCTACTCTACTCCCAAAGAGCCTTTTCTTTCTCACTTCA
GTCTGTATTTTTCTTCCCAAGTTAAGAATGTTGTTCCTAGACAAAAACCA
ACTTACCTATTTAAAACTAATTTATATTTGTTTTCTGATATGTGGTATAC
ACATATGTTCATTTGTGTGTACACATGTGAACATGCATGTATCAGTGGTC
AAATTCAGGTGTCTTCCTCAATCTCTTTCTACTTTATCTGTTGAGATGTG
ATTCACTCAATCTGGAGCTCACTGGTCCAGTGGCTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_b17.g1 MSMg01no137_b17.g1 CHROMAT_FILE:
MSMg01no137_b17.g1 PHD_FILE: MSMg01no137_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:41 2005
         (623 letters)



>mm_chr11_93758938_93759960
          Length = 1023

 Score = 1077 bits (557), Expect = 0.0
 Identities = 580/591 (98%), Gaps = 8/591 (1%)
 Strand = Plus / Minus

                                                                        
Query: 36   tcttgaaaaaccaaaaattgcctt--aaaaaaaaaaaaaag-aaaaaaaaaaaaagaaaa 92
            ||||||||||||||||||||||||  ||||||||||||||| ||||||||||||| ||||
Sbjct: 1023 tcttgaaaaaccaaaaattgccttaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaa 964

                                                                        
Query: 93   gaaaagaaaagaaaagaaaaggaaggatgggagctacagctcagctggtagagtgcttgt 152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  gaaaagaaaagaaaagaaaaggaaggatgggagctacagctcagctggtagagtgcttgt 904

                                                                        
Query: 153  ttagaagactgaagccctgggtctgactgatccttgaaaagcataaactggtgttgtgtc 212
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 903  ttagaagactgaagccctgggtctgactgacccttgaaaagcataaactggtgttgtgtc 844

                                                                        
Query: 213  acatgtctgtaatctcagcatttgggaggaaaaatagggcatcagaagttcatcattatc 272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843  acatgtctgtaatctcagcatttgggaggaaaaatagggcatcagaagttcatcattatc 784

                                                                        
Query: 273  cttaaggatgaatcagaccctgtctcaaccacaaccaactttacttctgagcttttttag 332
            |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||
Sbjct: 783  cttaaggatgaatcagaccctgtctcaaccacaacca-----acttctgagcttttttag 729

                                                                        
Query: 333  agaaacgagacacacacacttactacttcaggaaatcatgaatccacacttttacttcca 392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728  agaaacgagacacacacacttactacttcaggaaatcatgaatccacacttttacttcca 669

                                                                        
Query: 393  atcctactctactcccaaagagccttttctttctcacttcagtctgtatttttcttccca 452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668  atcctactctactcccaaagagccttttctttctcacttcagtctgtatttttcttccca 609

                                                                        
Query: 453  agttaagaatgttgttcctagacaaaaaccaacttacctatttaaaactaatttatattt 512
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 608  agttaagaatgttgttcctagacaaaaaccaacttacctatttaaaactaatctatattt 549

                                                                        
Query: 513  gttttctgatatgtggtatacacatatgttcatttgtgtgtacacatgtgaacatgcatg 572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548  gttttctgatatgtggtatacacatatgttcatttgtgtgtacacatgtgaacatgcatg 489

                                                               
Query: 573  tatcagtggtcaaattcaggtgtcttcctcaatctctttctactttatctg 623
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488  tatcagtggtcaaattcaggtgtcttcctcaatctctttctactttatctg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)