BAC Information

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BAC

Clone NameMSMg01-137N06
Chromosome11 (Build37)
Map Location 54,208,174 - 54,356,892
singlet/doubletdoublet
Overlap gene4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6
Upstream geneAff4, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6
Downstream geneCdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137N06.T7 (MSMg01no137_n06.b1)MSMg01-137N06.TJ (MSMg01no137_n06.g1)
ACCAG343653AG343654
length738701
length of high quality
(start - end)		357 (65 - 421)633 (69 - 701)
definitionCHROMAT_FILE: MSMg01no137_n06.b1 PHD_FILE: MSMg01no137_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:40 2005CHROMAT_FILE: MSMg01no137_n06.g1 PHD_FILE: MSMg01no137_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,208,174 - 54,208,528)(54,356,438 - 54,356,892)
sequence
CCCTTATCCNGNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TCAAAGAGGATGCGCGGAATTCTACTCTTTCCGACACCAGTAAAGCAGTA
GTTATAGAGAAAGCGCCACAGTTTGCAAACCTCTCTGCAGTTCTGAGTGA
GTTCTTACATTCCTTTTTTCTCTCATTTGGAAAATCCCTCATCTGTGTTA
GAAAGTGAAAGTAAGGTTCTCCTCTCTCCTAAATGATTTCCAAGCTAAGC
CTATAAGCCAGGATTGCTTTTGGCTTCAAATAATAACTAATAATAGTTTT
AGTACATATGGGCTTTGTGTTACTGTTTGCATTTTATTTCTTTATTATGT
ATCTGTGTGTGCGTATGCATGACACATGAGCATTTGCATGTGCTTAGTGC
AAATGAGTTAGAGAACAACCTATAGGAACCCTGTGGATGGAATTCCCATT
ATCACCCTTGTGAGCGAGCACCTTTACCCAGGGAACCATCTTGCCATCCC
CTAATTTTTATAAGCATAGCTATTTAACGCATAGATTGTGAGTGCATGAA
CATATATATGTGCCAAGACATACTTGTAAGAATCAGAGGACAGGTGAAAA
ATAAATTGGCGCGTTTGGTTGCCACGATTATTGCAAAATTCCCTAGCATA
AAGTTGCGAAAGACAGCCAGATTATAAAGAACTATCTAAATATTCCATGC
ATCTCGTAACATTCCATACTACTTATTGTTATCGCCTA

GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTTCTTCATGAGCATAGCATCTACTCAAAC
AATACAAAGCCAACAACTCATTACTTCTTACCTTTCTTACCTAAGTATTT
CTAAACAGCTATGACCTTTTCTTTAGTACCCACATATTTGTGGACACTAA
ATATAAAAATATTTCAAACACTCACACAGGCAAATACAGCTCAGTTTGTT
TTTAGTTTCCTCCAGATTAGTCTCAATGTTTGTAGGCTTTAGGCATCCCA
TCTAACACCTCCAAAGATCTGGTTTTTCCTTTATTTTAGAGATTTATTTT
ATTTTTAATTATGTGCTTATAAGGTGGTGGTAAGGAGTATGTTCATGTGA
TGTCTCCAGAGCTGGAGTTACAAGTGGTTATAAGCTGCTCACAGTGGGTT
CTGAGAACACAGGTCCTCTGTAAGAGCAGTAAACAGACTTAAGCCATTGA
GCCATCTCTCTCCAGCCCCGTGGTTTTTAAAAGTCCCCTTAAAATATGAT
TTTCTAAAGGACTCTCAAGAGACTCCGTATTATAATTTCCTATAAGCAAA
AATATATCCAATGGACGGCACTACTATTAACTCTGAAAGCAGCAAGCAAT
CTTTCTTTAGCCCTCTGATAAAATATAATCTTAACTATGAGCTTTGGCAT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_n06.b1 MSMg01no137_n06.b1 CHROMAT_FILE:
MSMg01no137_n06.b1 PHD_FILE: MSMg01no137_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:40 2005
         (357 letters)



>mm_chr11_54207972_54208728
          Length = 757

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctactctttccgacaccagtaaagcagtagttatagagaaagcgccacagtttgc 62
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctactcttttagacaccagtaaagcagtagttatagagaaagcgccacagtttgc 262

                                                                       
Query: 63  aaacctctctgcagttctgagtgagttcttacattccttttttctctcatttggaaaatc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaacctctctgcagttctgagtgagttcttacattccttttttctctcatttggaaaatc 322

                                                                       
Query: 123 cctcatctgtgttagaaagtgaaagtaaggttctcctctctcctaaatgatttccaagct 182
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 323 cctcatctgtgttagaaagtgaaagtaaggttctcgtctctcctaaatgatttccaagct 382

                                                                       
Query: 183 aagcctataagccaggattgcttttggcttcaaataataactaataatagttttagtaca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagcctataagccaggattgcttttggcttcaaataataactaataatagttttagtaca 442

                                                                       
Query: 243 tatgggctttgtgttactgtttgcattttatttctttattatgtatctgtgtgtgcgtat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tatgggctttgtgttactgtttgcattttatttctttattatgtatctgtgtgtgcgtat 502

                                                                  
Query: 303 gcatgacacatgagcatttgcatgtgcttagtgcaaatgagttagagaacaacct 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcatgacacatgagcatttgcatgtgcttagtgcaaatgagttagagaacaacct 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no137_n06.g1 MSMg01no137_n06.g1 CHROMAT_FILE:
MSMg01no137_n06.g1 PHD_FILE: MSMg01no137_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:40 2005
         (633 letters)



>mm_chr11_54356438_54357470
          Length = 1033

 Score =  872 bits (451), Expect = 0.0
 Identities = 454/455 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcttcttcatgagcatagcatctactcaaacaatacaaagccaacaactcattacttct 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctcttcttcatgagcatagcacctactcaaacaatacaaagccaacaactcattacttct 396

                                                                       
Query: 61  tacctttcttacctaagtatttctaaacagctatgaccttttctttagtacccacatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tacctttcttacctaagtatttctaaacagctatgaccttttctttagtacccacatatt 336

                                                                       
Query: 121 tgtggacactaaatataaaaatatttcaaacactcacacaggcaaatacagctcagtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtggacactaaatataaaaatatttcaaacactcacacaggcaaatacagctcagtttg 276

                                                                       
Query: 181 tttttagtttcctccagattagtctcaatgtttgtaggctttaggcatcccatctaacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tttttagtttcctccagattagtctcaatgtttgtaggctttaggcatcccatctaacac 216

                                                                       
Query: 241 ctccaaagatctggtttttcctttattttagagatttattttatttttaattatgtgctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ctccaaagatctggtttttcctttattttagagatttattttatttttaattatgtgctt 156

                                                                       
Query: 301 ataaggtggtggtaaggagtatgttcatgtgatgtctccagagctggagttacaagtggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ataaggtggtggtaaggagtatgttcatgtgatgtctccagagctggagttacaagtggt 96

                                                                       
Query: 361 tataagctgctcacagtgggttctgagaacacaggtcctctgtaagagcagtaaacagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  tataagctgctcacagtgggttctgagaacacaggtcctctgtaagagcagtaaacagac 36

                                              
Query: 421 ttaagccattgagccatctctctccagccccgtgg 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  ttaagccattgagccatctctctccagccccgtgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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