BAC Information

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BAC

Clone NameMSMg01-138F12
Chromosome11 (Build37)
Map Location 86,569,927 - 86,693,431
singlet/doubletdoublet
Overlap geneCltc, Dhx40
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2
Downstream geneYpel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138F12.T7 (MSMg01no138_f12.b1)MSMg01-138F12.TJ (MSMg01no138_f12.g1)
ACCAG344034AG344035
length707705
length of high quality
(start - end)
448 (54 - 501)453 (82 - 534)
definitionCHROMAT_FILE: MSMg01no138_f12.b1 PHD_FILE: MSMg01no138_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:21 2005CHROMAT_FILE: MSMg01no138_f12.g1 PHD_FILE: MSMg01no138_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,693,003 - 86,693,431)(86,569,927 - 86,570,376)
sequence
TCTGATAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAA
TCCGCGGAATTCTCACCCACTCACTCCCAACTTTGAAATTCGATACCTTT
TCAACCATTCCAGGTGTTCTCCCACCAAGAGACCCACTTTGTGCTTTGTG
CTACAAAGCAGTCCTCCTGAACCCATGTCTGCCTGCCCGGTTCTCAGCTC
AGTGCTGATGCACAGCAACACTCTAAGAGCTTTTCTTCTTTTGCCAACTC
CACCCACTGCTCCAAGAACGGAACCTTGACCTTCTGCAATGGGTACACTC
CAGCTCCTTAGGTGCCACGCATTGACTGCATCATCGGCTGGGGAGGCCTC
ATCTGCAGGCTGGCTTCCCCATCTGCAGGGAGTTGCTCCCCAGGAAGCCG
CTGGGAAGGCACAAGTGCCTACCTTCAATGTCAGAGACAGCATCTGACTC
ATTTGTACTCAGAGAAAAGCACACCACCTTGGGATCCTATGTCAGTCCCA
CTGTTACAGGAAATGGGAGCCTCTGGCGAATCTGGATGGAGCCTGTTCTC
TTCCACAGTGTGAGCAAGAAGCCTCCTTTTGCCCTTTTAAGTGTCTTTTG
GTACCGTCACATTGACCTCCCTAATTGAATAGGCCTTGTCAGCATCTTTT
GTCCCATCTGGTGGCTAGGCACCAAAAAAGTAAAAGTATTAGCCCGGAAG
GCTGCAT
CCGGNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACGCAGTCCTGTGAGACA
TACTCCTGCCGTAATCCCACAACTACCTGCTAAATTCCAAAAGGCCATAA
ATAACCTCTAAATAACTCTCCCTACCTGCAAGAATCAAAGTGAGCCTAAG
AGCTACACTAACCCTCTGAAGAAACCAAGAAAGGAAAAATATGCGCGTTC
CCCTTGGGACCTTGACCCCAGGCACCGAGACTGACACCGCCCCTTGCCGC
CCCTCTATCTTCTTTCTGTTCCTTCAGTGAGTGTGACCTTCGGTTCCTTA
TAGATTCAGGGAAGGCAAGCCACGAGCCACTGCTACCCTAACCCCAAGGT
GCCTTTCTCAGTGGTGAGCTGCAGAGGGAGGATGCAGCTCCTCCCCAACC
CACCCGCCACACAATTCCTGGGTGCAGACTCGATGTAGAAATGGGAATAG
ACCAAGGGAAGGTGACAGCCCCGCGTCGCTCGGGGTTAACGAGAAATCTT
GCTCTGGGAGAAACGCGCGAGAAGCTCCCCCACCTAGCCCCTACCCAAAT
GAATGACCTGAGTAAAATGGGAAGGGGGGTCTGGTATGCGCAGTTCTTGC
AATCCAGGAAGCCGAATAAAAAGCCGTCAGAACTAAGGGCTGGCCTCGCC
CGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_f12.b1 MSMg01no138_f12.b1 CHROMAT_FILE:
MSMg01no138_f12.b1 PHD_FILE: MSMg01no138_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:21 2005
         (448 letters)



>mm_chr11_86692787_86693631
          Length = 845

 Score =  777 bits (402), Expect = 0.0
 Identities = 424/432 (98%), Gaps = 3/432 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  ctcactcccaactttgaaattcgataccttttcaaccattccaggtgttctcccaccaag 76
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ctcagtcccaactttgaaattcgataccttttcaaccattccaggtgttctcccaccaag 586

                                                                       
Query: 77  agacccactttgtgctttgtgctacaaagcagtcctcctgaacccatgtctgcctgcccg 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agacccactttgtgctttgtgctacaaagcagtcctcctgaacccatgtctgcctgcccg 526

                                                                       
Query: 137 gttctcagctcagtgctgatgcacagcaacactctaagagcttttcttcttttgccaact 196
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct: 525 gttctcagctcagtgctgatgcacagcaacactccacgagcttttcttcttttgctaact 466

                                                                       
Query: 197 ccacccactgctccaagaacggaaccttgaccttctgcaatgggtacactccagctcctt 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ccacccactgctccaagaacggaaccttgaccttctgcaatgggtacactccagctcctt 406

                                                                       
Query: 257 aggtgccacgcattgactgcatcatcggctggggaggcctcatctgcaggctggcttccc 316
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 405 aggtgccacgcattgactgcatcagcggctggg-aggcctcatctgcaggctggcttccc 347

                                                                       
Query: 317 catctgcagggagttgctccccaggaagccgctgggaaggcacaagtgcctaccttcaat 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 catctgcagggagttgctccccaggaagccgctgggaaggcacaagtgcctaccttcaat 287

                                                                       
Query: 377 gtcagagacagcatctgactcatttgtactcagagaaaagcacaccaccttgggatccta 436
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gtcaga--cagcatctgactcatttgtactcagagaaaagcacaccaccttgggatccta 229

                       
Query: 437 tgtcagtcccac 448
           ||||||||||||
Sbjct: 228 tgtcagtcccac 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 845
Length adjustment: 10
Effective length of query: 438
Effective length of database: 835
Effective search space:   365730
Effective search space used:   365730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no138_f12.g1 MSMg01no138_f12.g1 CHROMAT_FILE:
MSMg01no138_f12.g1 PHD_FILE: MSMg01no138_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:21 2005
         (453 letters)



>mm_chr11_86569727_86570579
          Length = 853

 Score =  870 bits (450), Expect = 0.0
 Identities = 450/450 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgcagtcctgtgagacatactcctgccgtaatcccacaactacctgctaaattccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgcagtcctgtgagacatactcctgccgtaatcccacaactacctgctaaattccaaa 260

                                                                       
Query: 61  aggccataaataacctctaaataactctccctacctgcaagaatcaaagtgagcctaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggccataaataacctctaaataactctccctacctgcaagaatcaaagtgagcctaaga 320

                                                                       
Query: 121 gctacactaaccctctgaagaaaccaagaaaggaaaaatatgcgcgttccccttgggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctacactaaccctctgaagaaaccaagaaaggaaaaatatgcgcgttccccttgggacc 380

                                                                       
Query: 181 ttgaccccaggcaccgagactgacaccgccccttgccgcccctctatcttctttctgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaccccaggcaccgagactgacaccgccccttgccgcccctctatcttctttctgttc 440

                                                                       
Query: 241 cttcagtgagtgtgaccttcggttccttatagattcagggaaggcaagccacgagccact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcagtgagtgtgaccttcggttccttatagattcagggaaggcaagccacgagccact 500

                                                                       
Query: 301 gctaccctaaccccaaggtgcctttctcagtggtgagctgcagagggaggatgcagctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctaccctaaccccaaggtgcctttctcagtggtgagctgcagagggaggatgcagctcc 560

                                                                       
Query: 361 tccccaacccacccgccacacaattcctgggtgcagactcgatgtagaaatgggaataga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccccaacccacccgccacacaattcctgggtgcagactcgatgtagaaatgggaataga 620

                                         
Query: 421 ccaagggaaggtgacagccccgcgtcgctc 450
           ||||||||||||||||||||||||||||||
Sbjct: 621 ccaagggaaggtgacagccccgcgtcgctc 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)