BAC Information

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BAC

Clone NameMSMg01-138H01
Chromosome11 (Build37)
Map Location 103,289,711 - 103,290,200
singlet/doubletsinglet
Overlap genenone
Upstream geneGrn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1
Downstream geneLrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138H01.T7 (MSMg01no138_h01.b1)MSMg01-138H01.TJ (MSMg01no138_h01.g1)
ACCAG344104AG344105
length716701
length of high quality
(start - end)
451 (56 - 506)490 (82 - 571)
definitionCHROMAT_FILE: MSMg01no138_h01.b1 PHD_FILE: MSMg01no138_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:28 2005CHROMAT_FILE: MSMg01no138_h01.g1 PHD_FILE: MSMg01no138_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTTCNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTATAGAATCCTATTAGGAATTATGAAATCATCAGT
TTGTCTACATAGCATTACTACAAGAAAGTACATCTTCATTGATCGCAGAA
AATCTGCCCAATAAGGTGGGGTGATGCCCAGAAATAATTATATTAATGAT
GACAGGGAAGGCATATCACCTGCAAGAATAAATTCTGAGATGAGATTTCT
AAAGGCCCTGAAAACTAAAGTTCACCCACCACAGACCATGCAATACGATG
TGTCATCTCCATAATGCCACTTGCATGCCTTCAGTCTTTACTTGATGGCT
CCTGACAATGTTTTATGTCATAACATTTAAAGAATTGTTGCATTTTACTA
GATACATATGCCAGAGCATTATCAGCTTTAATCTATAAAGGTAACCCTAA
TATAGCCATCACTTCACTTCTAATAAACGTGTAATTACAGAATCAGCCTT
TTCAGAACTCAAGGCAAGAGCCCATTATAGTCCTAAATATGTGTCATTTG
TGTGATATACATATTTCAATTTTCAAAACTCTGCAAAATGAAACAATCAT
CTGTGAAATTACATTACTTTGGTTACTTTTTAGGGTTACTTTCTGGTAGG
TAAATGGTGATTATATAAAAGAACAAGGTAGACAACCCTTTATAGGTTTC
TTACCAAGTTAGAGAC
CCCTTTNCACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGACAGACAATCTGAGA
AGAAAACTCGAGGACAGTTTATATTAGAGTTTAAAAGAAAACCAACCCCC
GGGCAGACAAGCTACAAATCTCGGCAGCTGCCTGGAGGAGGAGATTGGAA
AAGGAGAGAGAGAGAGAAAGCCACCATGTTGTGCTAATGGTGACTTGAAG
GTCAACCACATGGTGAACAAGCAGCACTCTGGAGGGAGGACTTAAAAAAA
CAGTGGAAAAGCCCAAAGTTTCAGAGGGAGCATGTGTAGAATAGCTCAGG
TTTTGGATAGGTTGCAATGTTGGGTTTCTGCTCAGAGGTAGATTATATAT
TTGTTTTGGGTAGGAAGAGATAGTCTTTCCTTGACAGGCGTTCAGTGCTA
CCGCTCCCCAGGTCAGCAATTTGCACCCCAAGTTCTGGGACCCCCTAGCC
TCTGTGCTCTTGCTCTGGGTTCCCTGGGTCAGCCCTGTCCCAAGATGTGG
GACTCCAAGCTTGCATGCCCTTGGCTTGAGTAGGTTCTGACCTCTGACCT
TCTCCCTGCGTTGGTAGCATGCAGCTGTCAGTAGTTTCTAGAAAATGCAC
TCTTTGAGTTTCTCTATTGGGAAAGGAAAGCTGAAGGGTTAATAAATGTG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_h01.g1 MSMg01no138_h01.g1 CHROMAT_FILE:
MSMg01no138_h01.g1 PHD_FILE: MSMg01no138_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:28 2005
         (490 letters)



>mm_chr11_103289511_103290400
          Length = 890

 Score =  924 bits (478), Expect = 0.0
 Identities = 487/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggacagacaatctgagaagaaaactcgaggacagtttatattagagtttaaaagaaaa 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 aaggacagacaatctgagaagaaaactcaaggacagtttatattagagtttaaaagaaaa 260

                                                                       
Query: 61  ccaacccccgggcagacaagctacaaatctcggcagctgcctggaggaggagattggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaacccccgggcagacaagctacaaatctcggcagctgcctggaggaggagattggaaa 320

                                                                       
Query: 121 aggagagagagagagaaagccaccatgttgtgctaatggtgacttgaaggtcaaccacat 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 aggagagagagagagaaagccaccatgttgtgctaacggtgacttgaaggtcaaccacat 380

                                                                       
Query: 181 ggtgaacaagcagcactctggagggaggacttaaaaaaacagtggaaaagcccaaagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgaacaagcagcactctggagggaggacttaaaaaaacagtggaaaagcccaaagttt 440

                                                                       
Query: 241 cagagggagcatgtgtagaatagctcaggttttggataggttgcaatgttgggtttctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagggagcatgtgtagaatagctcaggttttggataggttgcaatgttgggtttctgc 500

                                                                       
Query: 301 tcagaggtagattatatatttgttttgggtaggaagagatagtctttccttgacaggcgt 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcggaggtagattatatatttgttttgggtaggaagagatagtctttccttgacaggcgt 560

                                                                       
Query: 361 tcagtgctaccgctccccaggtcagcaatttgcaccccaagttctgggaccccctagcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagtgctaccgctccccaggtcagcaatttgcaccccaagttctgggaccccctagcct 620

                                                                       
Query: 421 ctgtgctcttgctctgggttccctgggtcagccctgtcccaagatgtgggactccaagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtgctcttgctctgggttccctgggtcagccctgtcccaagatgtgggactccaagct 680

                     
Query: 481 tgcatgccct 490
           ||||||||||
Sbjct: 681 tgcatgccct 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)