Query= MSMg01no138_i13.b1 MSMg01no138_i13.b1 CHROMAT_FILE:
MSMg01no138_i13.b1 PHD_FILE: MSMg01no138_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:36 2005
(373 letters)
>mm_chr11_104072391_104073163
Length = 773
Score = 694 bits (359), Expect = 0.0
Identities = 365/367 (99%)
Strand = Plus / Minus
Query: 5 ggaattcactctgttcaccaagctggccttgagctcacacagatccacctgcctctacct 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ggaattcactctgttgaccaagctggccttgagctcacacagatccacctgcctctacct 614
Query: 65 ctcaagtgctgggtttaaagttgtgtgctaccatgcccagctcaaatgcagaaggtttta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctcaagtgctgggtttaaagttgtgtgctaccatgcccagctcaaatgcagaaggtttta 554
Query: 125 aaaaacagtgtgaagagttcattaacaaacacattgttgagtaaaaagcaccagcatgcg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaaaacagtgtgaagagttcattaacaaacacattgttgagtaaaaagcaccagcatgcg 494
Query: 185 aaaaagaaacccccaagtcttgtgcgctatgttttggctgtttacagatgcaggacggtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaaaagaaacccccaagtcttgtgcgctatgttttggctgtttacagatgcaggacggtc 434
Query: 245 acacagaacatgggcacagggagtacccttctctctctgccgcaagatatggggcactgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acacagaacatgggcacagggagtacccttctctctctgccgcaagatatggggcactgg 374
Query: 305 ctccaccactcacagacgggcttttgtgtccaacaataaaagcatctcgggcctgcatgc 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctccaccactcacagatgggcttttgtgtccaacaataaaagcatctcgggcctgcatgc 314
Query: 365 tttgttg 371
|||||||
Sbjct: 313 tttgttg 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_i13.g1 MSMg01no138_i13.g1 CHROMAT_FILE:
MSMg01no138_i13.g1 PHD_FILE: MSMg01no138_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:36 2005
(557 letters)
>mm_chr11_103937006_103937962
Length = 957
Score = 973 bits (503), Expect = 0.0
Identities = 551/583 (94%), Gaps = 26/583 (4%)
Strand = Plus / Plus
Query: 1 aattctcactgggagaagaagtctctgtgccagcgccccgtagtgcaggtggagagggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 aattctcactgggagaagaagtctctgtgccagcgccccgtagtgcaggtggagagggcg 249
Query: 61 cttttaccaagtcacactgtcaaccttcccagcaggagcccctattactctctactctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cttttaccaagtcacactgtcaaccttcccagcaggagcccctattactctctactctca 309
Query: 121 aaatggcccctcctgtgttctgaga-----------ttggaaaacaagattctgcttgcc 169
||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 310 aaatggcccctcctgtgttctgagatttcacacggcttggaagacaagattctgcttgcc 369
Query: 170 caccccatggctgaatatgcttcttcgctcggcagctcagctcgaatgaggcccaagccc 229
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 370 caccccatggctgaatatgctttttcgctcggcagctcagctcgaatgaggcccaagccc 429
Query: 230 tctccctgcctcctaactttctgcatgaactacttaaggctcagagagtgctttgaggac 289
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tctccctgcctcctaactttctgcatgaactacttaaggctcagagagtgctttgaggat 489
Query: 290 tccaaagctacccgatggtgaccccagttaccaatgtgtccagcaacacaacaacatgtc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tccaaagctacccgatggtgaccccagttaccaatgtgtccagcaacacaacaacatgtc 549
Query: 350 aacaaattgagtttaatggcctaactaacttacattagtgattcatgaatcaggcagcat 409
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 550 aacaaattgagtttaatggcctaactaacttatattagtgattcatgaatcaggcagcat 609
Query: 410 tccatctatggaacaggaagatgtccggccgaggctggtcacttggcaggagcagggaaa 469
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 610 tccatctatggaacaggaagatgtcgggccgaggctggtcacttggcaggagcagggaaa 669
Query: 470 caacatggaagaaaaacaaaacaaaacaaaacaa---------------cccataggttt 514
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 670 caacatggaagaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaacccataggttt 729
Query: 515 gtttaccaggtgtgatggttcagcatagttttcccagaggctc 557
||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 730 gtttaccaggtgtgatggttcagcataattttcccagaggctc 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
