BAC Information

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BAC

Clone NameMSMg01-138K05
Chromosome11 (Build37)
Map Location 89,857,761 - 89,858,093
singlet/doubletsinglet
Overlap genePctp
Upstream geneLOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream geneTmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138K05.T7 (MSMg01no138_k05.b1)MSMg01-138K05.TJ (MSMg01no138_k05.g1)
ACCAG344253AG344254
length704703
length of high quality
(start - end)		626 (48 - 673)511 (78 - 588)
definitionCHROMAT_FILE: MSMg01no138_k05.b1 PHD_FILE: MSMg01no138_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:44 2005CHROMAT_FILE: MSMg01no138_k05.g1 PHD_FILE: MSMg01no138_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTG
ATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGTGTGTGGGTTCATTTCTGGGACTTCAATTCTATTCCATTG
GTCTACTTGTCTGTCTCTATACCAGTACCATCCAGTTTTTACCACTATTG
CTCTGTAGTAAAGCTTTAGGTCAGGCATGTTGATTCCACCAGAGGTTCTT
TTAT

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCACTTTTCCTTAAACTAT
TTGCTCTACTCTGTGTTCATATGTCCTTATTTTTCGGCATAAGCCATGGG
TTTGGGGTTGCATTGGAACCAGTGATCCTCATTCTGGCTCCCCAAGTCAC
CAAGCTCACAGTGGTGCTTTGAAGGGTCATGATCCCCATAGAGTCATAGG
TTTGAACGCTTGGTCCCCACTGGTGGAAATGTTTGGGAAGGCTTAGGAGA
GGTGGTCTTGCTTAAGGAGTCACTTTAACACGTGTGTCACTGGGGGCAGG
CTTTGACATTTCAAAACTCAAAAGCATTTCCATCCCCTCTCCACACACAC
ACACACTTTCGGGTGAGGGTAGAAGCTTTCAGCTACCTTCCTCTCTGGCA
CCATGTCTGCTTGCCTGCCTGCACGCTTGCTACCAGATCCTCAGCCCCTG
GGATGGTAGTGAAGTCATTCCTGAGACTGTAAGCAAACCTCCAATAAACC
CATCTATAAGTTGCCTTGGCCATGGTGTCTCTGCTTAGTAATAGATTAGT
AAGATGCTCACCAGGAATCCAGAGAGGCTCCATTATTCTCAGAGAACCTC
ATGGTCCTTTCTCTTTGCATTTTAACAAGGATTTGCATTCCTCTAGAGTT
ATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_k05.g1 MSMg01no138_k05.g1 CHROMAT_FILE:
MSMg01no138_k05.g1 PHD_FILE: MSMg01no138_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:44 2005
         (511 letters)



>mm_chr11_89857761_89858671
          Length = 911

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctcacttttccttaaactatttgctctactctgtgttcatatgtccttatttttcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttctcacttttccttaaactatttgctctactctgtgttcatatgtccttatttttcgg 274

                                                                       
Query: 61  cataagccatgggtttggggttgcattggaaccagtgatcctcattctggctccccaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cataagccatgggtttggggttgcattggaaccagtgatcctcattctggctccccaagt 214

                                                                       
Query: 121 caccaagctcacagtggtgctttgaagggtcatgatccccatagagtcataggtttgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 caccaagctcacagtggtgctttgaagggtcatgatccccatagagtcataggtttgaac 154

                                                                       
Query: 181 gcttggtccccactggtggaaatgtttgggaaggcttaggagaggtggtcttgcttaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gcttggtccccactggtggaaatgtttgggaaggcttaggagaggtggtcttgcttaagg 94

                                                                       
Query: 241 agtcactttaacacgtgtgtcactgggggcaggctttgacatttcaaaactcaaaagcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  agtcactttaacacgtgtgtcactgggggcaggctttgacatttcaaaactcaaaagcat 34

                                            
Query: 301 ttccatcccctctccacacacacacacactttc 333
           |||||||||||||||||||||||||||||||||
Sbjct: 33  ttccatcccctctccacacacacacacactttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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