Query= MSMg01no139_f04.b1 MSMg01no139_f04.b1 CHROMAT_FILE:
MSMg01no139_f04.b1 PHD_FILE: MSMg01no139_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:41 2005
(554 letters)
>mm_chr11_86407783_86408736
Length = 954
Score = 1007 bits (521), Expect = 0.0
Identities = 539/547 (98%), Gaps = 5/547 (0%)
Strand = Plus / Plus
Query: 6 gaattcttctcatctatctctattgatattttctctttatgttgctctggctatcctgga 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 206 gaattcttctcatctatctctattgatattttctctttatgttgctctggctatcctaga 265
Query: 66 acttgctatggagatcaggctggcttctaactcacagagattcgcctgcctctgcctcta 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acttgctatggagatcaggctggcttctaactcacagagattcgcctgcctctgcctcta 325
Query: 126 gattattggattaaaggcatgtatgcagtaccatgccatgcctagctagcctttatattt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gattattggattaaaggcatgtatgcagtaccatgccatgcctagctagcctttatattt 385
Query: 186 ctactgtttcttttctcccccaccccaagcctgcttttaacttcctcttctctccccatg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctactgtttcttttctcccccaccccaagcctgcttttaacttcctcttctctccccatg 445
Query: 246 cttgtacatggtgcacaccatcatgctcagtagtaatttgtattttctttttccttaatt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cttgtacatggtgcacaccatcatgctcagtagtaatttgtattttctttttccttaatt 505
Query: 306 tttttttttgtgtatatatgtgtgcccaaatgtatatatgtatgtacaggtacctaagaa 365
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tttttttt-gtgtatatatgtgtgcccaaatgtatatatgtatgtacaggtacctaagaa 564
Query: 366 ggccagaaaagggcactggatcccatggagatagttacaggcagttatgtcctatccaat 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggccagaaaagggcactggatcccatggagatagttacaggcagttatgtcctatccaat 624
Query: 426 acaggtgctggaaacaaaacagggtctattgaaaaagtggcaagtgctcttaattgctga 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaggtgctggaaacaaaacagggtctattgaaaaagtggcaagtgctcttaattgctga 684
Query: 486 gccatctctccagccctggattttatattttctctctagctttttttttttttttttttt 545
|||||||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct: 685 gccatctctccagccctgtaatttatattttctctctag----ttttttttttttttttt 740
Query: 546 tggctag 552
|||||||
Sbjct: 741 tggctag 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_f04.g1 MSMg01no139_f04.g1 CHROMAT_FILE:
MSMg01no139_f04.g1 PHD_FILE: MSMg01no139_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:41 2005
(568 letters)
>mm_chr11_86575527_86576492
Length = 966
Score = 1038 bits (537), Expect = 0.0
Identities = 544/547 (99%), Gaps = 2/547 (0%)
Strand = Plus / Minus
Query: 1 ttagccggcagcccccaccgggctttttttttttttaagcctttaaaaaaaatttaacat 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 545 ttagccggcagcccccaccgggc--tttttttttttaagcctttaaaaaaaatttaacat 488
Query: 61 ctgtgtatttgacattacagaagctgaaaaatatttaaagtcataaactaggttataatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctgtgtatttgacattacagaagctgaaaaatatttaaagtcataaactaggttataatt 428
Query: 121 ccttaaaactttattactgatttaaataaaactttactaagtttcagtccttaactagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ccttaaaactttattactgatttaaataaaactttactaagtttcagtccttaactagtc 368
Query: 181 tgccctgaggtagtgaaagcttactacaacttgttactgagaactatttgagtgtgtcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgccctgaggtagtgaaagcttactacaacttgttactgagaactatttgagtgtgtcaa 308
Query: 241 aactaattgttaaaggaataggtttgtgggtcatagtttgctttgacctgaagacagtaa 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aactgattgttaaaggaataggtttgtgggtcatagtttgctttgacctgaagacagtaa 248
Query: 301 taactcaagaaaaagacagttctgcatatatagaactggggaatatagaactggggagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 taactcaagaaaaagacagttctgcatatatagaactggggaatatagaactggggagat 188
Query: 361 tacttagagacaaaatgcttggtatgtaagcatggagactgagtttgagtcccattcaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tacttagagacaaaatgcttggtatgtaagcatggagactgagtttgagtcccattcaat 128
Query: 421 agttttaaaagttttgttcttgcttttcttttttttaaattggcacacagtgccatattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 agttttaaaagttttgttcttgcttttcttttttttaaattggcacacagtgccatattt 68
Query: 481 ataagtatgtgcttataatcctgttcttggaggcaggagtgaccaaaatgaggcgaacag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ataagtatgtgcttataatcctgttcttggaggcaggagtgaccaaaatgaggcgaacag 8
Query: 541 cccctga 547
|||||||
Sbjct: 7 cccctga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 966
Length adjustment: 10
Effective length of query: 558
Effective length of database: 956
Effective search space: 533448
Effective search space used: 533448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
