BAC Information

Click to search

BAC

Clone NameMSMg01-139F08
Chromosome11 (Build37)
Map Location 45,597,912 - 45,598,255
singlet/doubletsinglet
Overlap genenone
Upstream geneEbf1, LOC382510
Downstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139F08.T7 (MSMg01no139_f08.b1)MSMg01-139F08.TJ (MSMg01no139_f08.g1)
ACCAG344766AG344767
length709711
length of high quality
(start - end)
344 (44 - 387)248 (72 - 319)
definitionCHROMAT_FILE: MSMg01no139_f08.b1 PHD_FILE: MSMg01no139_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:42 2005CHROMAT_FILE: MSMg01no139_f08.g1 PHD_FILE: MSMg01no139_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAATTTGCGGCGCTAAACGACTCCTATATTCAGAAGAGGGCGGAATTCT
CTGAGATTATACCTATCCTAGGAGCCCTCAACATTGTGGGCCAGGTCAAC
TGACCTTAGATGTCTCTTCCTAACTATATGTACTCTTCTCGTTGCTTCTT
GAGCATATTGGCCTCAGGATAAGTTGGATTTTTTTTTAATGTGACAGCCC
AGAGCTCCAGTATTCTTTTCTAAGAGGAAAATCATGTAGAATTTGTACTG
CCTCATAAGTCTCAAGGCTATCCTGTAACTCAATTGTGTCCATGGAGAGA
CTAAGGCCAGGGCAGAATCTTTAGAAACCTTGTATTTTTGTGTGCAAGAT
GTTGGCAACCTTGCAATCATGTTTTGAATACCTCTGGCGATGTTATCACC
ATCCTGGAAGCCTTGCACAAAATTTGATCAAAATCTTAAACTAATGTTCA
CACTTGAATCCTGCCTTTGATACTTATAATAATTCGGGTGCATGCCTCCA
CCCACTATGTGACTGCTGCTCTCTCACTGATTATAGATGTATGGTGTCCT
ATTGATTCTCCTCCTATAGTAAATTTCTTCTGATTGTCAATGCTCCCCAT
TCCTAATTAGTTACTTTCTATGTAAGTCTTGTACATTTTTCTTTACACCC
GTTGTTTATCTATATCTTGTGTTTTCCCCCGTCCTTTTTTCCCTATCTTA
ATTCTCTCT
AATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCTGAAATTCTCACCTGAGGAATACCGAATGGCTGACA
AGCACCTGAAAAAATGTTCAGCATCCTTAATCTTCAGAGAAATGCAAATC
AAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTTCGATCAA
AAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACAC
TCCTTCATTGTTGGTGGGAGTGCAAGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGTACATAGTACTACCAGAGGACTCAAC
AATACCACTTCTGAGCATATATCCAGAAGATGTCCCAAATGGTAATAAGG
ACACATGCTCCACTATGTTCATAGCAGTCTTATTTATAATAGCCATAAGT
TGGAAAGAACCCAGATGCTCCTCACCAGAGGAATGGATACAAAAAATGCG
GCACATTTACACAATGCAGTACTACTCACCTATTAACAAGAACGAATTTA
TGAAATTCCTACGCTAATGGTTGGACCTGGACGGCATCATCCTGATTGAG
GTAACACAATCACACCCCACCTCATATGATATGCACTCACTGACACATGG
ATATTATTCCCACCCCTTACTATATCTGATATTTACCAGATAACTTGTTA
AACTCCCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_f08.b1 MSMg01no139_f08.b1 CHROMAT_FILE:
MSMg01no139_f08.b1 PHD_FILE: MSMg01no139_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:42 2005
         (344 letters)



>mm_chr11_45597547_45598290
          Length = 744

 Score =  621 bits (321), Expect = 0.0
 Identities = 339/347 (97%), Gaps = 6/347 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattctctgaga---ttatacctatcctaggagccctcaacattgtgggccaggtcaac 57
           |||||||||||||     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaattctctgagaccc--atacctatcctaggagccctcaacattgtgggccaggtcaac 652

                                                                       
Query: 58  tgaccttagatgtctcttcctaactatatgtactcttctcgttgcttcttgagcatattg 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tgaccttagatgtctcttcctaactatatgtactcttctcgttgcttcttgagcatattg 592

                                                                       
Query: 118 gcctcaggataagttggatttttttttaatgtgacagcccagagctccagtattcttttc 177
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gcctcaggataagttgga-ttttttttaatgtgacagcccagagctccagtattcttttc 533

                                                                       
Query: 178 taagaggaaaatcatgtagaatttgtactgcctcataagtctcaaggctatcctgtaact 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 taagaggaaaatcatgtagaatttgtactgcctcataagtctcaaggctatcctgtaact 473

                                                                       
Query: 238 caattgtgtccatggagagactaaggccagggcagaatctttagaaaccttgtatttttg 297
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 472 caattgtgtccatggagagactaaggccagggcagaatctttagaaactttgtatttttg 413

                                                          
Query: 298 tgtgcaagatgttggcaaccttgcaatcatgttttgaatacctctgg 344
           |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 412 tgtgcaagatgttggcaaccttgcaaacatgttttgaatacctctgg 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)