Query= MSMg01no139_f14.b1 MSMg01no139_f14.b1 CHROMAT_FILE:
MSMg01no139_f14.b1 PHD_FILE: MSMg01no139_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:43 2005
(370 letters)
>mm_chr11_56362758_56363526
Length = 769
Score = 688 bits (356), Expect = 0.0
Identities = 362/364 (99%), Gaps = 1/364 (0%)
Strand = Plus / Plus
Query: 7 aattcctttcttggtccctacagtcacccagaggaagaaatttataagtccttgtctatc 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aattcctttcttggttcctacagtcacccagaggaagaaatttataagtccttgtctatc 266
Query: 67 tataacttatagaggcaactgaaattaatcaaaatactcaataatcatgaaaaaaataat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 267 tataacttatagaggcaactgaaattaatcaaaatactcaataatcatgaaaaaa-taat 325
Query: 127 taagcaatagtcagtttgcaagaatgctctgagatattttagagtttgagtagtgtgtgg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 taagcaatagtcagtttgcaagaatgctctgagatattttagagtttgagtagtgtgtgg 385
Query: 187 ttgagtattgagtttaaaaatgaatcacatgggctgaaggcaattctcagtacagtaatc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttgagtattgagtttaaaaatgaatcacatgggctgaaggcaattctcagtacagtaatc 445
Query: 247 tctgggttcgttctccagcaccacataaactgaacatgattgtataatctcaggactcaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tctgggttcgttctccagcaccacataaactgaacatgattgtataatctcaggactcaa 505
Query: 307 aaagtggaatgaggaagtgctgaagttcaaggtcattgctactatgtagtgaattccagg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaagtggaatgaggaagtgctgaagttcaaggtcattgctactatgtagtgaattccagg 565
Query: 367 ccag 370
||||
Sbjct: 566 ccag 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 769
Length adjustment: 9
Effective length of query: 361
Effective length of database: 760
Effective search space: 274360
Effective search space used: 274360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_f14.g1 MSMg01no139_f14.g1 CHROMAT_FILE:
MSMg01no139_f14.g1 PHD_FILE: MSMg01no139_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:43 2005
(536 letters)
>mm_chr11_56474637_56475571
Length = 935
Score = 909 bits (470), Expect = 0.0
Identities = 491/498 (98%), Gaps = 1/498 (0%)
Strand = Plus / Minus
Query: 1 cctttttctccagggtctactagacagagtgaggtccctctgtttgctttatcactcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cctttttctccagggtctactagacagagtgaggtccctctgtttgctttatcactcctt 438
Query: 61 aatagtagaaggaggaatgggggaagccttcttgtgcatttccttgaggctggagacccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aatagtagaaggaggaatgggggaagccttcttgtgcatttccttgaggctggagacccc 378
Query: 121 tgagatacaggacagatcagttaaaagaaacccagtatccagtggcaagtttatttctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgagatacaggacagatcagttaaaagaaacccagtatccagtggcaagtttatttctct 318
Query: 181 gatataatcatcagcagtcacacccaagggtgtgatcatagtccccatatcaagcaagtg 240
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gatataatcatcagtagtca-tcccaagggtgtgatcatagtccccatatcaagcaagtg 259
Query: 241 ttgcaaggtcttggccatgaggtttttttttttccacacagatttatcatcataaactta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttgcaaggtcttggccatgaggtttttttttttccacacagatttatcatcataaactta 199
Query: 301 tatttattaaagggttattttttgaggcaattttgaatgttgctttatttcttcttcaat 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 198 tatttattaaagggttattttttgaggcaattttgaatgttgttttatttcttcttcaat 139
Query: 361 agacttgttattgatatataagaaggctgctaatttttatgtgttaactttgaatcctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 agacttgttattgatatataagaaggctgctaatttttatgtgttaactttgaatcctgt 79
Query: 421 cactctgctgaaagtgtttaccactgctaaattttccagtggtccctgtagagtctaaaa 480
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 78 cactctgctgaaagtgtttaccattgctaagttttccagtggtccctgtagagtctaaaa 19
Query: 481 tgtcatctccaaataagg 498
|| |||||||||||||||
Sbjct: 18 tgccatctccaaataagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space: 486550
Effective search space used: 486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
