Query= MSMg01no139_i02.b1 MSMg01no139_i02.b1 CHROMAT_FILE:
MSMg01no139_i02.b1 PHD_FILE: MSMg01no139_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:56 2005
(529 letters)
>mm_chr11_70727398_70728326
Length = 929
Score = 961 bits (497), Expect = 0.0
Identities = 522/531 (98%), Gaps = 3/531 (0%)
Strand = Plus / Plus
Query: 1 aaattgttctttctattctccattgattttgtgtcactacaacatgtgtgatcatagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aaattgttctttctattctccattgattttgtgtcactacaacatgtgtgatcatagtat 259
Query: 61 ttttttaattaaatttattttattatattattttgtgtatgtgcatattttgcctgcata 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttttt-aattaaatttattttattatattattttgtgtatgtgcatattttgcctgcata 318
Query: 121 cctgtctgtacaccatgtgtgtgcagtgttgtattcctttggaactgaagtttaaatacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cctgtctgtacaccatgtgtgtgcagtgttgtattcctttggaactgaagtttaaatacg 378
Query: 181 tttgttagccaacatgtgggtgctggaaaccaaacctgggtcatctggaagagcagtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tttgttagccaacatgtgggtgctggaaaccaaacctgggtcatctggaagagcagtctg 438
Query: 241 tgcttaaattatttattcatctctccagccctgattgctggggtttttaaatttattttc 300
|||||||| | | | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 439 tgcttaaacaactgagtcatctctccagccctgattgctggggttttttaatttattttc 498
Query: 301 attttgaaagtttacagaatgggtttttagtctccttttttttttttttt--aaatttgg 358
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 499 attttgaaagtttacagaatgggtttttagtctcctttttttttttttttttaaatttgg 558
Query: 359 gacaattgccatcaatagcttaaactagttttgttttcccagcaattttgaatttcaaat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gacaattgccatcaatagcttaaactagttttgttttcccagcaattttgaatttcaaat 618
Query: 419 gagtaaaaatatttgaaagaaaagaaatagagaaattaacaataatcaactttttattat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gagtaaaaatatttgaaagaaaagaaatagagaaattaacaataatcaactttttattat 678
Query: 479 accaggcaagagttttaaaacacttgaaaataaaaaacaagaacatcaact 529
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 accaggcaagagttttaaaacacttgaaaataaaaaacaagaacatcaact 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_i02.g1 MSMg01no139_i02.g1 CHROMAT_FILE:
MSMg01no139_i02.g1 PHD_FILE: MSMg01no139_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:56 2005
(619 letters)
>mm_chr11_70802789_70803807
Length = 1019
Score = 1189 bits (615), Expect = 0.0
Identities = 618/619 (99%)
Strand = Plus / Minus
Query: 1 aggtattcggatttggcagcaagcatctttaccagctgagccatcttgctggccctcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 aggtattcggatttggcagcaagcatctttaccagctgagccatcttgctggccctcaat 815
Query: 61 ttatatttaaatgaataaaaaaggtgccgaggatgcagtaaaaagctcagagtccttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ttatatttaaatgaataaaaaaggtgccgaggatgcagtaaaaagctcagagtccttcct 755
Query: 121 tactgaactgttctgcctttggtgtgtgtgctccatcaacaggatgccctccgtttgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tactgaactgttctgcctttggtgtgtgtgctccatcaacaggatgccctccgtttgtct 695
Query: 181 ttaaagcagagtcttgcttatgtatgtaacccaggttgaccacagacagcgatgtggcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttaaagcagagtcttgcttatgtatgtaacccaggttgaccacagacagcgatgtggcac 635
Query: 241 acacccagcactaaggacatgctttcaacagggcttggttggctccagttggtcgactac 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 634 acacccagcactaaggacatgcttgcaacagggcttggttggctccagttggtcgactac 575
Query: 301 attacgtagtaaaactgtctcaaaacaaacagaaaaggaaccattagcttcgcctgcttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 attacgtagtaaaactgtctcaaaacaaacagaaaaggaaccattagcttcgcctgcttc 515
Query: 361 cacagtctgccctttcagctgcatctgtttccatcaccacggtgtctcctgctcagctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cacagtctgccctttcagctgcatctgtttccatcaccacggtgtctcctgctcagctct 455
Query: 421 atttgtgccccagagagaatattctgcggtgccagcatgtgagcataaacttgttggtct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atttgtgccccagagagaatattctgcggtgccagcatgtgagcataaacttgttggtct 395
Query: 481 gtgctctgtggctcaacttcacctagctagcacacatttactagaccttcagtccctcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gtgctctgtggctcaacttcacctagctagcacacatttactagaccttcagtccctcct 335
Query: 541 ggtgtgggggagaattgcagtctctaccatctctccagatgtaggttgaaatcacttctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggtgtgggggagaattgcagtctctaccatctctccagatgtaggttgaaatcacttctg 275
Query: 601 taatctgtaatctgtaata 619
|||||||||||||||||||
Sbjct: 274 taatctgtaatctgtaata 256
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
