Query= MSMg01no140_c16.b1 MSMg01no140_c16.b1 CHROMAT_FILE:
MSMg01no140_c16.b1 PHD_FILE: MSMg01no140_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:48 2005
(491 letters)
>mm_chr11_53085364_53086254
Length = 891
Score = 907 bits (469), Expect = 0.0
Identities = 484/491 (98%), Gaps = 4/491 (0%)
Strand = Plus / Plus
Query: 1 ggtaccacatcagtgatagaaaattctctgactttgaaagcaggtgataaaattgcacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtaccacatcagtgatagaaaattctctgactttgaaagcaggtgataaaattgcacac 260
Query: 61 tagaacgaaaatgttaacaattccattgacacacacagacattataacctggtattatag 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tagaacgaaaatgttaacaattccattgacacacacagacattataacccggtattatag 320
Query: 121 aactacaagcagtaggaggccatcattgatttaatattttcagtagtaatataatggtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactacaagcagtaggaggccatcattgatttaatattttcagtagtaatataatggtat 380
Query: 181 ctgaatagttctacaaactgctgtcattgtcaaatttactgtctaactagttactttaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaatagttctacaaactgctgtcattgtcaaatttactgtctaactagttactttaac 440
Query: 241 tgaagtctactacttcatgaatcaataccgacaatccaacaagttctgtcagctctagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaagtctactacttcatgaatcaataccgacaatccaacaagttctgtcagctctagct 500
Query: 301 tagcccttaacctaggcccacaattccgtttgtttgtttgttttgttttgtggtttttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 tagcccttaacctaggcccacaattccgtttgtttgtttgttttgttttgtggttttgca 560
Query: 361 ggacaatgttctctgtgcagccctggcctcactctgtgagtgtcctggactcactctgta 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 ggacaatgttctctgtgcagccctggcctcactctgtg----tcctggactcactctgta 616
Query: 421 gcccagacctcaaattcactgaactccatgtgcctctacctcccaagtgctaaaatcaaa 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcccagacctcaaattcactgagctccatgtgcctctacctcccaagtgctaaaatcaaa 676
Query: 481 ctgaaagcctg 491
|||||||||||
Sbjct: 677 ctgaaagcctg 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_c16.g1 MSMg01no140_c16.g1 CHROMAT_FILE:
MSMg01no140_c16.g1 PHD_FILE: MSMg01no140_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:49 2005
(462 letters)
>mm_chr11_53258842_53259704
Length = 863
Score = 816 bits (422), Expect = 0.0
Identities = 453/464 (97%), Gaps = 3/464 (0%)
Strand = Plus / Minus
Query: 1 cagagaggttaattcatttgtttcaagttccagccaggatgcccaaaactggtgtgctta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 663 cagagaggttaattcatttgtttcaagttccagccaggatgcccaaaactggtgtgttta 604
Query: 61 gctcgactcctccctgggattcgtcctcctgctgagctcatcctgagacagagagcaagc 120
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gctcgactcctccctgggacgcgtcctcctgctgagctcatcctgagacagagagcaagc 544
Query: 121 ctcactctgctggaatcc--tttttgctgataacgtggagtcacggggcgcttcaggccc 178
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 543 ctcactctgctggaatcctttttttgctgataacgtggagtcac-gggcgcttcaggccc 485
Query: 179 aggaaatgctcaatgtgcattccgtcaaactgtaagacaccgtcatctttgcctcatcca 238
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aggaaatgctcaacgtgcattccgtcaaactgtaagacaccgtcatctttgcctcatcca 425
Query: 239 gcccttgacacatatttcccaggcacaggtcaagggcagggacacagtgtaaactcacgg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gcccttgacacatatttcccaggcacaggtcaagggcagggacacagtgtaaactcacgg 365
Query: 299 tgctgatgggtcatgcagtcctgcacagactttgctggagtgtgaggtccagagggacct 358
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct: 364 tgctgatgggtcatgcagtcctgcacagactttgctggagtgtgcggtccggaggaacct 305
Query: 359 gggcagcaacctcccctctgacccaccagctgttaaacctgcttctcgtttttgtttatc 418
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gggcagcatcctcccctctgacccaccagctgttaaacctgcttctcgtttttgtttatc 245
Query: 419 tcccttttccacttttcatttgtgtgtgcttgtgttcttgcgtg 462
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tcccttttccacttttcatttgtgtgtgcttgtgttcttgcgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space: 385556
Effective search space used: 385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
