Query= MSMg01no140_f20.b1 MSMg01no140_f20.b1 CHROMAT_FILE:
MSMg01no140_f20.b1 PHD_FILE: MSMg01no140_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:04 2005
(270 letters)
>mm_chr11_100179866_100180536
Length = 671
Score = 460 bits (238), Expect = e-134
Identities = 262/274 (95%), Gaps = 9/274 (3%)
Strand = Plus / Plus
Query: 5 gaattcacttga-ctctgaactttttcctctggcttccttctcctgagagctgggatgta 63
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttgacct-tgaactttttcctctggcttccttctcctgagagctgggatgta 263
Query: 64 ccaccatacctagaagttggcagtatttttaagttaagagattttatataaagcacccac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaccatacctagaagttggcagtatttttaagttaagagattttatataaagcacccac 323
Query: 124 cctttggtgagcatttgaataaagtctgacacagtagttatcagcctccggttctcctat 183
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 tctttggggagcatttgaataaagtctgacacagtagttatcagcctctggttctcctat 383
Query: 184 tggcccccacaaacccagttacatcacacttggctgtct-------tttttttttttttt 236
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 tggcccccacaaacccagttacatcacacttggctgtctctttttttttttttttttttt 443
Query: 237 tttcggtttttcgagacagggtttctctgtatac 270
||||||||||||||||||||||||||||||||||
Sbjct: 444 tttcggtttttcgagacagggtttctctgtatac 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 671
Length adjustment: 9
Effective length of query: 261
Effective length of database: 662
Effective search space: 172782
Effective search space used: 172782
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no140_f20.g1 MSMg01no140_f20.g1 CHROMAT_FILE:
MSMg01no140_f20.g1 PHD_FILE: MSMg01no140_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:04 2005
(510 letters)
>mm_chr11_100319222_100320132
Length = 911
Score = 967 bits (500), Expect = 0.0
Identities = 508/511 (99%), Gaps = 1/511 (0%)
Strand = Plus / Minus
Query: 1 cacgtgtgtggcttcaccaccataacttgcctcctaaatacttttaacttgttaggaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 cacgtgtgtggcttcaccaccataacttgcctcctaaatacttttaacttgttaggaagg 652
Query: 61 aaagaacctagacttgcttaaatctgttcaaggctgacattctgaaattttaaacggaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aaagaacctagacttgcttaaatctgttcaaggctgacattctgaaattttaaacggaca 592
Query: 121 taacagcatttgtaataataatcgtgcaggtctaatgtggctctttggaaaagaaatttc 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 591 taacagcatttgtaataataatcgtgcaggtctaatgtggctctttgggaaagaaatttc 532
Query: 181 ttttatgaaaacagttttttttaaagccagctttttaaaagcttattcaagtgaaccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ttttatgaaaacagttttttttaaagccagctttttaaaagcttattcaagtgaaccttt 472
Query: 241 gttgtgtagcttttgttttcttagctggaaaaagatttgattacaccaaaaagtaagggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gttgtgtagcttttgttttcttagctggaaaaagatttgattacaccaaaaagtaagggt 412
Query: 301 ggtccattattgtgagtaaggctaactttccacattataatgggacccttcctatcttcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggtccattattgtgagtaaggctaactttccacattataatgggacccttcctatcttcc 352
Query: 361 tttcaaactgagaatgtcagtcatgaacttttaagcggtcatcacttgcagctgtttgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tttcaaactgagaatgtcagtcatgaacttttaagcggtcatcacttgcagctgtttgca 292
Query: 421 tgattagncttgtgtatcctgagagctttgcttttctgtgccagttcaaaataacatttt 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgattagtcttgtgtatcctgagagctttgcttttctgtgccagttcaaaataacatttt 232
Query: 481 tgctaagaa-atttaaaattaactgatatca 510
||||||||| |||||||||||||||||||||
Sbjct: 231 tgctaagaacatttaaaattaactgatatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 911
Length adjustment: 10
Effective length of query: 500
Effective length of database: 901
Effective search space: 450500
Effective search space used: 450500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
