BAC Information

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BAC

Clone NameMSMg01-140J11
Chromosome11 (Build37)
Map Location 66,501,930 - 66,502,526
singlet/doubletsinglet
Overlap genenone
Upstream geneMap2k4, Zkscan6, Dnahc9, Gm879, LOC668323
Downstream geneA530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140J11.T7 (MSMg01no140_j11.b1)MSMg01-140J11.TJ (MSMg01no140_j11.g1)
ACCAG345684AG345685
length705697
length of high quality
(start - end)
658 (48 - 705)597 (67 - 663)
definitionCHROMAT_FILE: MSMg01no140_j11.b1 PHD_FILE: MSMg01no140_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:22 2005CHROMAT_FILE: MSMg01no140_j11.g1 PHD_FILE: MSMg01no140_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCAGACATTAACAAATAAAATAACTCATGTGATCACCTTGCCTAC
ACACACACACACACACACACACACACACACACACACACACACACAGATGC
AGATACACAGATACACACAGACACAATCACACATAGACATACACAGACAC
AGATATAGACACACAGACACACATAGACATACATAGAGGTACAGACACAC
AGACACACACACACACAAATACCCACATATACACAGAGACACAGACATAT
ATACCCATATACATACACACAGAGACACAAACACACACACACACACACAC
ACACACAAATACCCACATATATACAGAGACACAGACACATATACCCATGC
ACATACACACAGAGACATAAACACACATACACACAGAGACACAGACACAC
ACAGACTCATACACATAAGACACACACAGATAACATATACACAGACACAC
ACACACAGATACACACATACACACAGAGACACAGATAAATTGAGACTCAT
AGTCAGACACACTTACATATATACACAGACACATACAGACTCACACACAG
GTACACACACCGGAGACATACATATATATAGAGACATGACACACACACAC
AGACACACACACAGACATAGACTCACACAGAGACACACAGACACACGGAG
ATGCA
NACGATGAAGAGGTAGGCCTGGCGGCGCCTGTTCAAAAATTGAGGTGAAC
TATAGAATTTCCGCGAAATTCTGTCTGATACATGGCGGGGACTCAGTAAA
TATCTTCAAGTTGTGTTTGTAGCATTATATGTTTTTATTTGTTTTATCCT
GGAAAATATAAAGGAAATGTAAATCACCGTCATGCCGTCACCCAGGGCAG
TGTTCAACAAATGAATGTGTCATATGAACAATGTAAAAAGCGTCCACATG
GAACCCAAATGGATAAGGAATATTTTTCTTCCTTAGATTCACTAAGTTCT
GTAAAGAGTTACTGTGTATCCCCCTAAAATTCCTGAAGATTCTTGCATAC
CCATATCCTTATCATATTGGCCTGTTCTTCTGTCCTTGTATCAAGATTTC
ACTCCTGTTGCAAAAGTGTAGGGTGAGGAAGGGTCTTTTTCTCTATACCA
AGCAATCTTCTGGTGGATCACTAGGGGGGTGTAGCTCATCTTAGTTCTAA
AAGTACCCCCCCCCAACACACACACATACACAAGGGAAGTGCTTAAAGGG
CTGATTCATCAGACCGCCCCTCTCCAGAACTCATGTGTCAATCAAATCCA
AGACTATTCTCTGTGCTTCTCATTGAGTCTATATGGATGATTCCAGAACC
TACCACTCAAGTTAGAGTGTCTGTTGAGGTGGGTTACAGGATCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_j11.g1 MSMg01no140_j11.g1 CHROMAT_FILE:
MSMg01no140_j11.g1 PHD_FILE: MSMg01no140_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:22 2005
         (597 letters)



>mm_chr11_66501729_66502726
          Length = 998

 Score = 1046 bits (541), Expect = 0.0
 Identities = 583/597 (97%), Gaps = 1/597 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   attctgtctgatacatggcggggactcagtaaatatcttcaagttgtgtttgtagcatta 61
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 202 attctgtctgatacatggcggggactcagtaaatatcttcaagctgtgtttgtagcatta 261

                                                                       
Query: 62  tatgtttttatttgttttatcctggaaaatataaaggaaatgtaaatcaccgtcatgccg 121
           |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||
Sbjct: 262 tatgtttttatttgttttatcctggaaaatatgaaggaaatgtaaatcactgtcctgccg 321

                                                                       
Query: 122 tcacccagggcagtgttcaacaaatgaatgtgtcatatgaacaatgtaaaaagcgtccac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcacccagggcagtgttcaacaaatgaatgtgtcatatgaacaatgtaaaaagcgtccac 381

                                                                       
Query: 182 atggaacccaaatggataaggaatatttttcttccttagattcactaagttctgtaaaga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atggaacccaaatggataaggaatatttttcttccttagattcactaagttctgtaaaga 441

                                                                       
Query: 242 gttactgtgtatccccctaaaattcctgaagattcttgcatacccatatccttatcatat 301
           |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 442 gttactgtgtctccccttaaaaatcctgaagattcttgcatacccatatccttatcatat 501

                                                                       
Query: 302 tggcctgttcttctgtccttgtatcaagatttcactcctgttgcaaaagtgtagggtgag 361
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 502 tggtctgttcttctgtccttgtatcaagatttcactcctgttgcaaaagtgtagggggag 561

                                                                       
Query: 362 gaagggtctttttctctataccaagcaatcttctggtggatcactaggggggtgtagctc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 562 gaagggtctttttctctataccaagcaatcttctggtggatcactaggggggtgtagttc 621

                                                                       
Query: 422 atcttagttctaaaagtaccccccccc-aacacacacacatacacaagggaagtgcttaa 480
           ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 622 atcttagctctaaaagtaccccccccccaacacacacacatacacaagggaagtgcttaa 681

                                                                       
Query: 481 agggctgattcatcagaccgcccctctccagaactcatgtgtcaatcaaatccaagacta 540
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 682 agggctgattcatcagaccgcccctctccagaactcaggtgtcaatcaaatccaagacta 741

                                                                    
Query: 541 ttctctgtgcttctcattgagtctatatggatgattccagaacctaccactcaagtt 597
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 742 ttctctgtgcttctcattgagtctatatggatgattccagaacccaccactcaagtt 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 998
Length adjustment: 10
Effective length of query: 587
Effective length of database: 988
Effective search space:   579956
Effective search space used:   579956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)