BAC Information

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BAC

Clone NameMSMg01-140N04
Chromosome11 (Build37)
Map Location 62,272,187 - 62,272,355
singlet/doubletsinglet
Overlap genePigl
Upstream geneMfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1
Downstream genePrr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140N04.T7 (MSMg01no140_n04.b1)MSMg01-140N04.TJ (MSMg01no140_n04.g1)
ACCAG345859AG345860
length711721
length of high quality
(start - end)
244 (71 - 314)169 (70 - 238)
definitionCHROMAT_FILE: MSMg01no140_n04.b1 PHD_FILE: MSMg01no140_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:40 2005CHROMAT_FILE: MSMg01no140_n04.g1 PHD_FILE: MSMg01no140_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGGCGGAA
TTCCCTATAATTCTACGGATACTGCCGTTACACACACATGCCCTGTGGGT
GTACTTTTCTGGATTTCTTATAAGTTCTTCCATCTACCACCCTTCCAACC
CTTATTCCACCCCAATTCCTTCTAACCTCCCAACACTAGGTTGGAGAGAA
AGAAGGTTAGAGGAGAAAGGAGGCGAAGACCTCTCTAGACTACTTCCGGC
TGATTAGGGTCATCAGGTTCCTTGGGGCACATCCAGGCTCCATCATCAGG
ATCTCCAACTAGCATTCTATTTTACTAGCAATAGCAAACACAACAGCAGT
GGGGGCAGTAGCCACCCCAGGCCTTCTCCAGAGTTCCCAGAATTAAATTG
CAACCGGCAAAACTCAAGCCTCCCTACAGCATAGGACAGTCATAGTTAAG
GGCTGCGGAATAACTGAAGCAGCCCATATCTCACACCTGAGATTAAAACT
CAAATATATTCTCATAACTGTGGTTTTTTTAAGATACCAAAATTTTCACT
ATATGCCACCTTAATAATTAATGTATTAGAAAAAACTTTAAGTCCCTTTT
TTGTATCCCGTGCGAAGTTACTTTGCCATCCGGTCTAGAACCCTTTTCCT
ACTCCTTCCTGGAAGTCCCTTTAGGGCCACTTCTTCTTTCCTCCCTTTTT
GGAAGGCGCGC
AATGAAGTGGGAGGCCTGGCGGCCGCCTGGTTTCAGAGGGGGGGTGACCT
ATAGAAGGTTTCTAGAAATTCGCTCGGGGTTCCCTAACCTATCTGGGAAG
TCGGCTGTTTCTGTCCCCAGACTGACCAGCACAGAGAAAGTAGCTACCTA
CGACAGAAAACCTTTCGGGAAGAAGTTAACTAAGATCGGTTAGTTCCCTA
ACCCAGCGACCCTCCTACAGTCTCCTACCTGAGGAGAAGCAGAGCAGGGA
CACCTGCTGCTCCAGGCGTGCCACGCCTAGCATGGTGGGAGCAAAGAACA
TGGCTTCATCGTCATGTTGTTTTCTTCACTACAAGGGCTCGGCTTCCGGC
TCTCGGCTGGTCCGCCTGCTCCGGAGATCTTCTTTCGTCTGCTGAGTTCC
TACACCGGAGGAAGCTCCATGTCAGGACATGTTTCTGCCACCTCCCTGAA
TTCTTTTATTCCCATGCCGGGTAAGCGGCACTGCGCCTGCGCAGTCTGGC
CGCCTGCGGTTGTTACCAGGGGTTCCCTGCGCGCAACCTCTACTCGTCTG
CAAACAGCCTCCCCCGGTTCCCTCTGTATTGCCGACCTGCACCTAATAAC
TTGCGGACTAACTCCGACACTTTCTTCTCTAACTGCTCCCTACCCACCAT
TGGCGCAATCTTCTAATTCGCATCTCTTATTCAAATTCCCCCCACACTTT
TGTGTCCTTATTCCATCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_n04.g1 MSMg01no140_n04.g1 CHROMAT_FILE:
MSMg01no140_n04.g1 PHD_FILE: MSMg01no140_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:40 2005
         (169 letters)



>mm_chr11_62271987_62272555
          Length = 569

 Score =  319 bits (165), Expect = 5e-92
 Identities = 168/169 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcgctcggggttccctaacctatctgggaagtcggctgtttctgtccccagactgaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcgctcggggttccctaacctatctgggaagtcggctgtttctgtccccagactgaccag 310

                                                                       
Query: 61  cacagagaaagtagctacctacgacagaaaacctttcgggaagaagttaactaagatcgg 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 309 cacagagaaagtagctacctacgacagaaaacctttccggaagaagttaactaagatcgg 250

                                                            
Query: 121 ttagttccctaacccagcgaccctcctacagtctcctacctgaggagaa 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttagttccctaacccagcgaccctcctacagtctcctacctgaggagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)