BAC Information

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BAC

Clone NameMSMg01-140O04
Chromosome11 (Build37)
Map Location 107,792,144 - 107,792,405
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5
Downstream genePrkca, Apoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140O04.T7 (MSMg01no140_o04.b1)MSMg01-140O04.TJ (MSMg01no140_o04.g1)
ACCAG345905AG345906
length708705
length of high quality
(start - end)
262 (43 - 304)40 (96 - 135)
definitionCHROMAT_FILE: MSMg01no140_o04.b1 PHD_FILE: MSMg01no140_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:45 2005CHROMAT_FILE: MSMg01no140_o04.g1 PHD_FILE: MSMg01no140_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAAATTGCGGCGCTAATACGACTCCTATTTTCGAAGGGCGCGGAATTC
ATTTTCTTTTCTACGACGAGAACGGGTGTCTATTGAGCTAGCTTACAAGA
AAAGAATCTTGGGATATCCAACTTGGCTTCCTTAGAGCTCAAAGCATTTC
TTGCACACACCCTGGCAAGCAGTACCCAGCTCCCTGCGATGCTCACTCAT
GGGGGAGGGTGGGAAAATATAGAGCCTTTGCTGTGTGCATAGTACTAAAT
TAGCTGAACCCTAATTACTTCACCACTGCCCTCCAGAGCAAGCAAGCATG
CTGTATGCTATAGGAGATTCTCATGGTGTTGACTGACCACTCAAGTGTAA
ACGTGGGAAAACACCGCCTCTAGACTCATTGCTGAATGCCAGAATCTGAG
AACCCGGGTTTTCTGAGGTTTCCATCCGCTCTCGGATGCCTTCATTGTCG
AGATACGCCTGTGCGTCCACTATCTTGATTCCTTAGTGCCGTAACACCTT
CAGAGAACGCGATCATGTCGTACCAGTGAGGCATTACAGTTCTTCCTGGG
CTCCCTTTATGCCTTCACTCTTTTATAATACAGTTCTCCTGTTTCTTTGC
TCGGTGCCCCAACACCTTTATACGCCGGTTTTCTCACTTATTACCCTCTG
ATTTTACCCTTTTAACCCCTTTGTACTTTGTAATCAATTTTGCGCGCATT
TGCCGACT
CATGAAGTGCGTAGCCTGGCGGTCGCCTGGTTTTCGAAATAAGGTGAACT
ATATAAGGATCTCCGGAATTCACGTTTGTGGCCAATAAGGCGGCTATATT
CTCAGTGTTGCTCGCTCTTCTTGCCCTTGACTCTGGCTCTAATGAACTTA
AGACCATAGAATTTGTGACTCATTGTTTATTAGCACAAATGAGATCAAAT
CAGAGCTCGTGCTCGTGATCACACACAGCATTCTCACGCTTGGTGCAGCG
TGATTAGAGCAAATGTAGCAAGTCATACAGTCAAGACCCTCCAAGTGACC
CACGTCTCATTTGTTGACGCCTCATCTACAACTGTCCTTTGCTGAAGATG
CCTTTGCATCTCATTGGCCGAAACTCATCCAAGCTCCTCGTGTAATGTTT
GCCCTATATACTTGCATCACATGTCTCTGCCTGCTCTTTTCTCTCTCTGA
AAATTACTTCTATCTTTCACGTCCTCTACTCTCTGACTACTCTGACACTC
TTCATCTCTTCTGAAGTCTTCTGCTAATCCACTTGTCTCCCTTTCGTCTG
CACTGATTCCCCTTGCTACAAGGCTCGTCCGTCTCTCCCCTTGTGCCGTA
GTCCCTCCTCATGCACCTCTTGCGTATCTGTCTTTCATCGTGATACTTTT
CAACAGGTCTTGTCCTTCCAAACTTTTCGTTTCATATTACTCACTCGCTC
CGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_o04.b1 MSMg01no140_o04.b1 CHROMAT_FILE:
MSMg01no140_o04.b1 PHD_FILE: MSMg01no140_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:45 2005
         (262 letters)



>mm_chr11_107791942_107792605
          Length = 664

 Score =  458 bits (237), Expect = e-133
 Identities = 256/263 (97%), Gaps = 4/263 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattc-attttct--tttctacgacgagaacgggtgtctattgagctagcttacaagaa 59
           |||||| |||||||  |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccattttctcgtttc-acgacgagaacgggtgtctattgagctagcttacaagaa 261

                                                                       
Query: 60  aagaatcttgggatatccaacttggcttccttagagctcaaagcatttcttgcacacacc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagaatcttgggatatccaacttggcttccttagagctcaaagcatttcttgcacacacc 321

                                                                       
Query: 120 ctggcaagcagtacccagctccctgcgatgctcactcatgggggagggtgggaaaatata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctggcaagcagtacccagctccctgcgatgctcactcatgggggagggtgggaaaatata 381

                                                                       
Query: 180 gagcctttgctgtgtgcatagtactaaattagctgaaccctaattacttcaccactgccc 239
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 382 gagcctttgctgtgtgcatagtactaaattagcggaaccctaattactacaccactgccc 441

                                  
Query: 240 tccagagcaagcaagcatgctgt 262
           ||||||||||||||||| |||||
Sbjct: 442 tccagagcaagcaagcacgctgt 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 664
Length adjustment: 9
Effective length of query: 253
Effective length of database: 655
Effective search space:   165715
Effective search space used:   165715
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)