BAC Information

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BAC

Clone NameMSMg01-141D21
Chromosome11 (Build37)
Map Location 13,866,076 - 13,866,895
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141D21.T7 (MSMg01no141_d21.b1)MSMg01-141D21.TJ (MSMg01no141_d21.g1)
ACCAG346168AG346169
length1,1881,176
length of high quality
(start - end)		748 (97 - 844)738 (89 - 826)
definitionCHROMAT_FILE: MSMg01no141_d21.b1 PHD_FILE: MSMg01no141_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:25 2005CHROMAT_FILE: MSMg01no141_d21.g1 PHD_FILE: MSMg01no141_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCAGTTTTNNNNNNNATCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATTGCACTTATCAAAGCCTTATAAAAAACATGTACA
GTTCACAGCATGGATCAGATATACCTTGAAACCTCTTGAGATTTGTGAAG
TATAATCCAAATGGAGGATAACCAAGTCATTGTACGCCCTTTGCAATCCA
CTCTCCATGAGATACATATCATATCATGACAGAAAGTGACATACATGTGG
CAGAAATGTCCTGTGAATATTAGAGAGCAATAAATTTTAGATGTCAATTC
TCCATTTGCCCAACATTTATTAACATTCTTTCTAACCTAGGAATAATATC
CATAGGTTAGTTGTTTAAATACCACATATAGATAAAGAGAAATAACTTTG
AGCCTCTCATCAGAATTTAGCTTTATGTGAAAAACTGTTCCGCTTATAAT
TTTGGCTATTCTGATGTTATTTTTCTCCTTTCCCATTATTATAGATGAAA
AGGTGTTTTGCTAGCAAAACAGATTTACAACAAAGCCCTCTTAATACTCT
TGCCCTGTGATTGTTGTTTGACAGACATGAAAGTTTGCTACCATTTCAAG
CAGAGTGGGAGTCATTGCCTTATTTAGAGTTTGGCTTTACACCATAAAAA
TACCACGCCATAGATGTGTTTCTAAGTCAGTATTGCCTCCTGAATTTTTA
TTAATGGTCCTGTTGACCCAAAGTTAAACTAAATTCTGACAACCCCCATG
TGCACCTTGCCACCTATCATTTTCCTACAGCTAGATGTCTTCTGCAACTG
ACAAAGCATTCAAAATGTACACAGAGATATAATATTCTCTTCTATAGGAA
ACTGTGATTTTAATGGGCCACCTATTCTTTGAAGAGCTCTTGCAACAACA
TATTAATGAACTTTGGTCCTATGTTATTTTTATTTGCTCATTTTTTTAAC
CTGCAGGATCAGTTTCTTCTCCTTTGCAAACCAGGCACAGCCTTAGTAGA
AAAACCATTTTTACTCCTTTCCTCCTTAAATTAAAAAAGCTTCTTTCGAA
AATTTCCTTCAGTTTGACCGGAAAGGAAAAAACCGCCTTTTCCCAAAAAA
AAAAGGGGCCCAAATTCTCTTGGCAAATTTTAAATTGAATGGGTTTGGTG
GGGAAAAGAACCCCCCCAATTACTTTTTTGTTTTTTTT

NCCCGTTTTTTNNNNAAACATGGNATGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAGACGTCTTTAATTTCAT
TCTTTCTTTTTTTGTTGTCCTGTTTTGTTTTGTTTCCAGGCAGAGTTTCT
CTGTATAGCACTGGCTGTCCTGGAACTCACTGTGTAGACCTGTAGACCAG
GCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCACCCAAGTGCTGGG
ATTAAACGTGTTTGCCACCACACCCAGCAATTTCGTTCGTTCTTTATTCC
CTGACCAATTTATCATTGAAGAGAGAGTTGTTCTGTTCCCATGGTTATGT
AGGTTTTCTGTTGTTTTTGCTGTTATTGAAGACCAGGCTTAAGCCATGGT
GATGTGATATGATGCATGGGATTATTTCAGTCTTCTTGTACCAGGTGAGG
CTTTTTCCAGTGACTGATTATATGGCCAGTTTTGGAGAAGTTATCATGAA
GTGCTGAGAAGAATGTGTATTCTTTTGATTTAGAGTGAAATGTTCTATAG
ACATCTGCAAAAATCCGTTTGGTTCAAAACTTCTGTTAATTTCACTGTGC
CTCTGTTTAGTTTCTGTTTTCATGATCTGTCCATTGTCAAGAATGGAGTA
TTAAAGTCTCTCCCACTTTTATTTTGTGGGGTTCAATATGTATTTTGAGC
TTTAGTAAAGTTTCTTTTCTGAATGTGGATATCCTTGCATTTGGTACATA
GGTGTTCAGAACTGAGACTTTCTGATAGATTTTTCTTTTGTTGAATATGA
AGTATTCTTTCTCATCTTGCTTGATAAAGTTTGGTTGATAGTCAGTTTTA
TTTGATATTTAGCAAACTTTCAAAACTACTGGCTTATTTAGGGGCATGTT
CCTTTTCTTTTACATTAAAACCATGAAAAAATATGGTATTTATTCTTTGA
GAATGCCCCACATATTTACCAATGCTATTTGGATCCATTTATCTGGCCCT
CCCTACTTTTTTTTCCCCGGCCTTTTCAAAAAAAATTTACCACTTTTTCC
ATTTTAAATTTAAACTCTTTTTTTTTTATAACCCACTTAACCCCTTTTTA
AAACACCCCGCGTTTATATCCTTGGGCGGGGTTTTTTTTTAAAAAGTTTT
TTTAAGAAAACAACATGAATTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_d21.b1 MSMg01no141_d21.b1 CHROMAT_FILE:
MSMg01no141_d21.b1 PHD_FILE: MSMg01no141_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:25 2005
         (748 letters)



>mm_chr11_13865950_13867097
          Length = 1148

 Score =  973 bits (503), Expect = 0.0
 Identities = 705/825 (85%), Gaps = 84/825 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacagttcacagcatggatcagatatacctt----gaaacctcttgagatttgtgaagta 56
           ||||||||||||||  |||||||||||        |||||||||||||||||||||||||
Sbjct: 127 tacagttcacagcacagatcagatata----aaaagaaacctcttgagatttgtgaagta 182

                                                                       
Query: 57  taatccaaatggaggataaccaag-tcattgtacgccctttgcaatccactctccatgag 115
           ||||||||||||||||||| |||| | ||||||| |||||||||||||||||||||| ||
Sbjct: 183 taatccaaatggaggataatcaagat-attgtacaccctttgcaatccactctccatcag 241

                                                                       
Query: 116 atacatatcatatcatgacagaaagtgacatacatgtggcagaaatgtcctgtgaatatt 175
           |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 242 atacatatcacatcatgacagaaagtgacatacaagtggcagaaatgtcctgtgaatatt 301

                                                                       
Query: 176 agagagcaataaattttagatgtcaattctccatttgcccaacatttattaacattcttt 235
           | ||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 302 aaagagcaataaattctagaagtcaattctccatttgcccaacatttattaccattcttt 361

                                                                       
Query: 236 ctaacctaggaataatatccataggttagttgtttaaataccacatatagataaagagaa 295
           |||||||||||| ||||| |||||||||||||||||||||| | |||| |||| ||||||
Sbjct: 362 ctaacctaggaacaatattcataggttagttgtttaaatacgaaatattgatagagagaa 421

                                                                       
Query: 296 ataactttgagcctctcatcagaatttagctttatgtgaaaaactgttccgcttataatt 355
           ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 422 atatctttgagcctctcctcagaatttagctttatgtgaaaaactgttccacttgtaatt 481

                                                                       
Query: 356 ttggctattctgatgttatttttctcctttcccattattatagatgaaaaggtgttttgc 415
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttggctattctgatgtcatttttctcctttcccattattatagatgaaaaggtgttttgc 541

                                                                       
Query: 416 tagcaaaacagatttacaacaaagccctcttaatactcttgccctgtgattgttgtttga 475
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 542 tagcaaaacagatttacaacaaagccctcttactactcttgccctgtgattgttgtttga 601

                                                                       
Query: 476 cagacatgaaagtttgctaccatttcaagcagagtgggagtcattgccttatttagagtt 535
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 602 cagacatgaaagtttgctaccatttcaagcagagtgggagtcgttggcttatttagagtt 661

                                                                       
Query: 536 tggctttacaccataaaaataccacgccatagatgtg----------------------- 572
           ||||||||||||||||||||||||| |||||||||||                       
Sbjct: 662 tggctttacaccataaaaataccacaccatagatgtggttttttttttatttaaaatatt 721

                                                                       
Query: 573 ---------------------------------------------------tttctaagt 581
                                                              |||||||||
Sbjct: 722 ttttattacgtattttcctcaattacatttccaatgctatcccaaaagttgtttctaagt 781

                                                                       
Query: 582 cagtattgcctcctgaatttttattaatggtcctgttgacccaaagttaaactaaattct 641
           |||||||||||||||| |||||||||||||||||||||||| || |||||||||||  ||
Sbjct: 782 cagtattgcctcctgactttttattaatggtcctgttgaccgaatgttaaactaaacact 841

                                                                       
Query: 642 gacaacccccatgtgcaccttgccacctatcattttcctacagctagatgtcttctgcaa 701
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 842 gacaacccccatgtgcgccttgccacctaccattttcctacagctagatgtcttctgcaa 901

                                                        
Query: 702 ctgacaaagcattcaaaatgtacacagagatataatattctcttc 746
           |||||||||||||||||||||||||| ||||||||  ||||||||
Sbjct: 902 ctgacaaagcattcaaaatgtacacatagatataaccttctcttc 946


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 748
Length of database: 1148
Length adjustment: 10
Effective length of query: 738
Effective length of database: 1138
Effective search space:   839844
Effective search space used:   839844
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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