Query= MSMg01no141_h19.b1 MSMg01no141_h19.b1 CHROMAT_FILE:
MSMg01no141_h19.b1 PHD_FILE: MSMg01no141_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:56 2005
(686 letters)
>mm_chr11_40651389_40652474
Length = 1086
Score = 1185 bits (613), Expect = 0.0
Identities = 642/653 (98%), Gaps = 4/653 (0%)
Strand = Plus / Minus
Query: 1 catctcatgctaggatttgtatgtgtgcct--attattccaaattttcccaaatcttagc 58
||||||||||||||||||||||||||| | | |||||||||||||| ||||||||||
Sbjct: 651 catctcatgctaggatttgtatgtgtg--tggaatattccaaattttcttaaatcttagc 594
Query: 59 atctttgttgaaatgaaaatacagaaatcagagagtaaacaaaactcctgagcatcagat 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atctttgttgaaatgaaaatacagaaatcagagagtaaacaaaactcctgagcatcagat 534
Query: 119 acttcctgataggaatcgtactgccaacatgcattctggccagaaccaaatccaccacag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 acttcctgataggaatcgtactgccaacatgcattctggccagaaccaaatccaccacag 474
Query: 179 ggtcctcttcttatcatctgatgatacttcagaaagtctgagaaatacagaatcactaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggtcctcttcttatcatctgatgatacttcagaaagtctgagaaatacagaatcactaag 414
Query: 239 tttgcaccctcacctggatatcacaatgcacctaaaacattcagggtgaccctaatctga 298
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 413 tttgcaccctcacctggatatcacaatgcacctaaaacattcagggcgaccctaatctga 354
Query: 299 gccggttttatctgctaagcttgcctgggccctgcctgccctgggccccacctgtcctgg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gccggttttatctgctaagcttgcctgggccctgcctgccctgggccccacctgtcctgg 294
Query: 359 gccccacagcaaatgccaagccacaggcattcacgtctttttaaaagaaccccagcctac 418
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gccctacagcaaatgccaaggcacaggcattcacgtctttttaaaagaaccccagcctac 234
Query: 419 tccttctcaatggaatgctgagtccatctaagtcaatggttctcaacttgtgagttgcaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tccttctcaatggaatgctgagtccatctaagtcaatggttctcaacttgtgagttgcaa 174
Query: 479 tccttttggccaacctctatctccaaaacaacttatgttgtgattcaaaaccagtagcag 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 173 tccttttggccaacctctatctccaaaacaacttatgttgtgattcaaatccagtagcag 114
Query: 539 ttatgaagtagcaacaaaaataattttgttttggtctggggtcaccacaacatgaggagc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ttatgaagtagcaacaaaaataattttgttttggtctggggtcaccacaacatgaggagc 54
Query: 599 tgtactaaagggtcacagcattaggaaggctgagaacccctgacctaaatgaa 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 tgtactaaagggtcacagcattaggaaggctgagaacccctgacctaaatgaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_h19.g1 MSMg01no141_h19.g1 CHROMAT_FILE:
MSMg01no141_h19.g1 PHD_FILE: MSMg01no141_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:56 2005
(657 letters)
>mm_chr11_40495991_40497047
Length = 1057
Score = 1232 bits (637), Expect = 0.0
Identities = 652/657 (99%)
Strand = Plus / Plus
Query: 1 tgactcatacccttccaagttttggcagaaagagaaattgtgtggatgtaaacagtagaa 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgactcatacatttccaagttttggcagaaagagaaattgtgtggatgtaaacagtagaa 260
Query: 61 aagtagaaactttgccttttaataaaaatacactaggatggtaagtagtagctcatactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtagaaactttgccttttaataaaaatacactaggatggtaagtagtagctcatactg 320
Query: 121 gatgaacttaaggaaaatcaggaatattttaagtatctactggcatatacagaatttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgaacttaaggaaaatcaggaatattttaagtatctactggcatatacagaatttcat 380
Query: 181 ctagtttgttattatggtcatgataaataaagcctatctggacaaccaaatgaaatgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagtttgttattatggtcatgataaataaagcctatctggacaaccaaatgaaatgaat 440
Query: 241 actcatgactgatgaacaaaacaggataatagcactgaagtacaatttaggatcaagaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcatgactgatgaacaaaacaggataatagcactgaagtacaatttaggatcaagaac 500
Query: 301 aagtgggaagccatctttacaagctacatatttgatagaaggaatataaaagttttccta 360
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 aggtgggaagccatctttacaagctacatatttgatagaaggagtataaaagttttccta 560
Query: 361 actgtgtaagcatgctgttgattatggtaatatcgtggctgtccctagaagatacacaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgtgtaagcatgctgttgattatggtaatatcgtggctgtccctagaagatacacaac 620
Query: 421 caagtgtttgaggactgatacaccactgaatatggccaagtatacacgcacaaaaaagca 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 caagtgtttgaggactgatacaccactgaatatggccaagtatacgcgcacaaaaaagca 680
Query: 481 tcaaacagaaactgatcaatctgagtgtagggttgattgctcatactcttacaaccttgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaaacagaaactgatcaatctgagtgtagggttgattgctcatactcttacaaccttgg 740
Query: 541 atgaagaattattcagaattagactttatactggtcccaggtgagaggtttgatagtctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgaagaattattcagaattagactttatactggtcccaggtgagaggtttgatagtctt 800
Query: 601 tggatgactagcactttaagtagtatttccttttataattactgagcaagtaaacaa 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggatgactagcactttaagtagtatttccttttataattactgagcaagtaaacaa 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
