BAC Information

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BAC

Clone NameMSMg01-142H20
Chromosome11 (Build37)
Map Location 105,777,304 - 105,777,771
singlet/doubletsinglet
Overlap geneTanc2
Upstream geneLOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, LOC667737
Downstream geneCyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142H20.T7 (MSMg01no142_h20.b1)MSMg01-142H20.TJ (MSMg01no142_h20.g1)
ACCAG347086AG347087
length1,2531,123
length of high quality
(start - end)
592 (141 - 732)469 (129 - 597)
definitionCHROMAT_FILE: MSMg01no142_h20.b1 PHD_FILE: MSMg01no142_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:13 2005CHROMAT_FILE: MSMg01no142_h20.g1 PHD_FILE: MSMg01no142_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGATTTTNNNNNNNGGCATTGGGCGCTATAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCCATGATCATGGGCCCACTGTTGAACTTCTCTGACTGTG
AAATGAGTTCCTTGGTCACAATCAATACTGTGTGGAACACCATGACGATA
GATAAGGCATTCTGTCAATCCGTGAATGGTGGTTTTAGCAGAGGCATTAC
GTGCAGGAAAGGCAAATCCATAACCAGAATAAGTATCAACTCCAGTAAGA
ACAAAACGCTGTCCTTTCCACGAAGGAAGTGGTCCAATGTAGTCAATCTG
CCACCAGGTTGCTGGCTGGTCACCTCGAGGAATGGTGCCATATCTGGGGC
TCAGTGTTGGTTTCTGCTGTTGGCAGATCTGGCAATCAGCAGCAGCTGTA
GCCAGGTCAGCCTTGGTGAGTGGAAGCCCGTGTTGCTGAGCCCAAGCATA
ACCTCCATCTCGACCACCATAACCACTTTGTTCATGTGCCCATTGAGCAA
TGACAGGGATGGCTGGGGAGAGAGGCTGATTGTCCACAGAACAGGTCATC
TTATCCACTTGATTATTGAACTCCTCCTCGGCCGAAGTCACCTTTTGGTG
AGCATTTACATGGGACACAAATATCTTCACATCCTTTGCCCATTTGGAGA
GATCTATCCACATACTTCTTCCCCAGATGTCTTTCTCACCAATTTTCCAA
TTGTGATCTTTCCAAGTCCCTGACCATCCAGCCAGTCCATTGGCTATAGC
CCATGAGTCAGTGAATAATCGTACATCTGGCCATTTCTTCTTGCCAACAA
ACTGTAATACCATGTGTACTGCCCGAAGTTCTGCCCACTGTGAAGATTTT
CCCTCCCCTGTGTCTTTTAAGGTTGTCCCAGAAAGGGCTTGAAATGCTGC
ACCTGTCCCCTTCTGGGTGTTGTCCGCATTACGTTCCAATTCTTCCTTAA
TCCTGTTTCTATTTTTCTTCCCTTCTGTCATCCAATCTTATTAATCTCCC
CCTATTCTTTTTATCCTCTTCCTTTTCCTCCTAATGCCTTTGTTTCACTT
TTTCTATCCCTTTTGCTTTTCTACTACTTTCTTTTCGTTATTTTTTTTTA
TTTTCCTTGTTTTTCTCTCTGTTTCCCTTTTTCATTTTCTTCCTTTTNTC
TATAATTTTCTTATATCTTGTTCCTTCCCCTCTTTCTTCTTATTCCTCTC
TTTTCTTCTTATTACTCCTCCTTATATTTCTTCTATCTTGACTCTCCCTC
ATC
NNNGGCTCATGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTTATTCCTCCGGAAGCATGCAGGACCTAGA
ATGGTCTGATTTTTCTCTAACGTAACGCCAGAAAATAGTGTCAGTTCATG
GTATTTGTGGTCAGGCAGGAGGTAAGGTGGCAGGCGAGAAGAGAAGCTTG
GAGTTTGTGACTCTCACTTTGTAGACCATTCCCCCAAGATGAAGTAAATC
TGACCAACTTCAGGATCCTCTACAGAAACACTGAACGGCTTTTACACATT
GCATATGGAAGGCTGTATATAAAGTGCAGAAAGATCCAGGTGGTAGCTCC
TGCTTCCCCTGGACTCTCCCTCTGTAGAGCTACAGGTCGCATCAGTTATT
TACCTTTCTTCATCTTTTAATCAGGAGAAGTGTAGAGTCTTCCAAGGGAA
GAATTATGGAAGTGCCTATTTACATTAGGAGCCAAGAATCCTTGACCTGG
GATAGCAGAAGTTATGTTGTGCCAAGGCTTATATTCTTTTTTTTTTTAAA
AGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACAC
ACCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGTGGTTGCTGGG
ATTTGAACTCCGGACCTTTGGAAGAGCAGTAGGGTACTCTTACCCACTGA
CCCATCTCACCAGCCCAAGGCTTATATATTCTTAAGAATGACATAACCGT
CCATAAGTATGATCCCTACAGTAATAAAGACCTTTGAATTTATGTGATTT
TATATGATTTAATTTGGCTCAAGGTTCTAGCTTCCTACAGCCCATGATAA
TCATGATGTACTCTAACGATGCCTAGGAACTAAAATTCTGCTTTAGACCT
GGTATATTTATAAAACCCTGCATTTTACCGTAATTTTTATCTCCTTTTAA
CCCCGCCCCCCCCTTTGAAGTCTGCTGTCTCAAACCCGGGTCTGGAGTAT
TTTCCCCCCCCTCTCCCTCCCCTTTAACCTTTTATCCCTTCTAGGTTCTT
TTTCTTTCTTATTCCTTGCTAATTTCTTTTCTTCTCCTCATCTTTTTTTT
CTCCCTCTATTCCTCTTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_h20.g1 MSMg01no142_h20.g1 CHROMAT_FILE:
MSMg01no142_h20.g1 PHD_FILE: MSMg01no142_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:14 2005
         (469 letters)



>mm_chr11_105777166_105778034
          Length = 869

 Score =  897 bits (464), Expect = 0.0
 Identities = 467/468 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   agaaaatagtgtcagttcatggtatttgtggtcaggcaggaggtaaggtggcaggcgaga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agaaaatagtgtcagttcatggtatttgtggtcaggcaggaggtaaggtggcaggcgaga 547

                                                                       
Query: 62  agagaagcttggagtttgtgactctcactttgtagaccattcccccaagatgaagtaaat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agagaagcttggagtttgtgactctcactttgtagaccattcccccaagatgaagtaaat 487

                                                                       
Query: 122 ctgaccaacttcaggatcctctacagaaacactgaacggcttttacacattgcatatgga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctgaccaacttcaggatcctctacagaaacactgaacggcttttacacattgcatatgga 427

                                                                       
Query: 182 aggctgtatataaagtgcagaaagatccaggtggtagctcctgcttcccctggactctcc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aggctgtatataaagtgcagaaagatccaggtggtagctcctgcttcccctggactctcc 367

                                                                       
Query: 242 ctctgtagagctacaggtcgcatcagttatttacctttcttcatcttttaatcaggagaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctctgtagagctacaggtcgcatcagttatttacctttcttcatcttttaatcaggagaa 307

                                                                       
Query: 302 gtgtagagtcttccaagggaagaattatggaagtgcctatttacattaggagccaagaat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtgtagagtcttccaagggaagaattatggaagtgcctatttacattaggagccaagaat 247

                                                                       
Query: 362 ccttgacctgggatagcagaagttatgttgtgccaaggcttatattctttttttttttaa 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 246 ccttgacctgggatagcagaagttatgttgtgccaaggcttatattctttttttttttta 187

                                                           
Query: 422 aagatttatttatttattatatgtaagtacactgtagctgtcttcaga 469
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aagatttatttatttattatatgtaagtacactgtagctgtcttcaga 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)