Query= MSMg01no142_m18.b1 MSMg01no142_m18.b1 CHROMAT_FILE:
MSMg01no142_m18.b1 PHD_FILE: MSMg01no142_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:56 2005
(611 letters)
>mm_chr11_12419946_12420956
Length = 1011
Score = 1073 bits (555), Expect = 0.0
Identities = 588/599 (98%)
Strand = Plus / Minus
Query: 13 ggatacagaacttgcaagcatgaagcatacatacataaatgtatacatattgaaaagttt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ggatacagaacttgcaagcatgaagcatacatacataaatgtatacatattgaaaagttt 548
Query: 73 aatttataaatttgtcacagtaagagatttatgacaacagtaataaaaatagtataatga 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aatttataaatttgtcacagtaagagatttatgacaacagtaataaaaatagtataatga 488
Query: 133 tatgccaaaagagagtaatttaaacctatgaattatttctataatgttccaaataatatt 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 487 tatgccaaaagagagtaatttaaacctatgaattatttctataatgttccaaatagcatt 428
Query: 193 ttctgactatagcttatagaaaccacagaaagcaaaaccaaagatgaggaaatgccatat 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttctgactatagcttatagaaaccacagaaagcaaaaccaaagatgaggaaatgccatat 368
Query: 253 attatatgctcttcaaggttaatgtgtgttttttggagagatggctcagcagttaaaagc 312
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 367 attatatgctcttcaaggttaatgtgtggtggctggagagatggctcagcagttaaaagc 308
Query: 313 actgactgctcttccagaggtcttgagttctaatcccagcaaccacatggtggctgtaat 372
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 307 actgactgctcttccagaggtcttgagttctattcccagcaaccacatggtggctgtaat 248
Query: 373 gggatccataccttcctctggtgtgtctgaagacagttacagtgtactcatatacataac 432
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gggattcataccttcctctggtgtgtctgaagacagttacagtgtactcatatacataac 188
Query: 433 ataaatagaactatttttaaaggattccatgtgtggtaaggacatattctgccactgagc 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ataaatagaactatttttaaaggattccatgtgtggtaaggacatattctgccactgagc 128
Query: 493 cacattcttagtgctgattatttccgctgttaaaacatttggaattttgcagaattagat 552
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 127 cacattcttagtgctgattatttctgctgttaaaacatttggaattttgcagaattagat 68
Query: 553 aaatgcttcagatacatttcaggatttacttcatctcaatttcattagatatcatccta 611
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 67 aaatgcttcagatacatttcaggatttacttcatctcaatttcaataggtatcatccta 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_m18.g1 MSMg01no142_m18.g1 CHROMAT_FILE:
MSMg01no142_m18.g1 PHD_FILE: MSMg01no142_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:56 2005
(666 letters)
>mm_chr11_12300354_12301418
Length = 1065
Score = 833 bits (431), Expect = 0.0
Identities = 573/667 (85%), Gaps = 86/667 (12%)
Strand = Plus / Plus
Query: 1 aaagaaaataggaaaaaaaaatacttcattgaactccgagaagataat--acccgtgtga 58
|||||| ||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct: 280 aaagaagatagg-aaaaaaaatacttcattgaactccgagaagataataaa----tgt-- 332
Query: 59 gtaatgcccaggaaaatcccaatacacagctgaatggaaaggtaaaggtaattccagatt 118
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 333 gtaatgcccaagaaaatcccaataaacagctgaatggaaaggtaaaggtaattccagatt 392
Query: 119 tgaaaatggaatttaataaagagatagaaacattgaacagaacacaagctaaaataaaag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgaaaatggaatttaataaagagatagaaacattgaacagaacacaagctaaaataaaag 452
Query: 179 taaaattgaaaaactcaatatcccactagaaaactcagaagaaagacttgcaagtaaaac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 taaaattgaaaaactcaatatcccactagaaaactcagaagaaagacttgcaagtaaaac 512
Query: 239 gaatcaagaagacagaatattagaactcagtgataaagaagaggacagaagccgggcgtg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaatcaagaagacagaatattagaactcagtgataaagaagaggacagaagccgggcgtg 572
Query: 299 gtggcacacacctttaatcctagcacttgggaggcagaggcaggcgaatttctgagttcg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gtggcacacacctttaatcctagcacttgggaggcagaggcaggcgaatttctgagttcg 632
Query: 359 aggccagcctggtctacagagtgagttccaggacagtcaaggctacacagagaaaccctg 418
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 633 aggccagcctggtctacagagtgagttccaggacagccaaggctacacagagaaaccctg 692
Query: 419 tctcgaaaaacaaaacaaacaaacaacaa-aaaaaaaggaaagaaagaaagaaagaaaga 477
||||||||||||||||||||||||||||| ||||||| ||| ||| ||| |||| ||
Sbjct: 693 tctcgaaaaacaaaacaaacaaacaacaacaaaaaaa--aaa-aaa-aaa-aaag---ga 744
Query: 478 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 537
|| || |||| |||
Sbjct: 745 aa---ag---gaaa-aaa------------------------------------------ 755
Query: 538 aagaaagaaagaaagaaagaagaagaggacaaagatcaaattagcaggttataggttctt 597
|||||||| |||||||||||||||||| || ||||||||||||
Sbjct: 756 ---------------aaagaaga---ggacaaagatcaaattagtag-ttataggttctt 796
Query: 598 atgcatgcatgcttgcaggtgcacacacccacacacatacacacatcataattcttgtag 657
|||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 797 atgcgtgcatgcttgcatgtgcacacacccacacacatacacacatcaaaattcttgtag 856
Query: 658 tctatac 664
|||||||
Sbjct: 857 tctatac 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1065
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1055
Effective search space: 692080
Effective search space used: 692080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
