CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGACCGAAACCGAATGGCAGAGAAGCACTTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
GTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAA
ACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTAG
GATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGAAG
AATGAAGACTGAAGTGTGGAC

CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTTGGCTAAGTAAGCTGAATGAAAC
AGCTGCTGATGTTCATGCTTCTTAGATCTAGAAATTTAAGATATTTAGGA
AGGGAAGGAAAATAGTCAAATAAAACCCATAGTTTGAGTGAGGAAGATGG
CTTGGCAGGTAAAGGTGCTTGTTCTAAGTTTGATGACCTGAATTTGTTTC
TTGGAACCCACAAAGTGGAAGGAGAAAACCAACTCTTACAAGTTGTACTG
ATTCCCACCCATGCACAGTAGTTTGTAAGTTCACAAAATAAATAAACGTA
AAAAGAATTGAACACTAACTTATGTCAAAATAGAGGTCATAAAGGAACAA
CCTGTAAGTACTATAAATCAGTTTTTGGCATATGATAGTCCAAGATTAAA
CACTTAGAAATTATGGGAAACTACCATGATTTAAATAAAGATGAGCAGAT
GCTCTGGCTGGCACGTGTGGTAGGCTCCTGTCTTAAGCAGAAGTGATGGT
GCTTCAATTGTTGGTATTAGTGAGCTGTCTGTTTAATTCTGTAGCACTCC
CTTGGAGTTCCAAGAATTGGCTTTGTTTTTTCCAAATTGTTAGCAGTTTA
GCATACCTTTGATGCCTTTGANAATTAAGAGCAAATTTAAGAAAACCAAA
TTAAAATTAAAAAAATCCTACG

Query= MSMg01no143_f13.g1 MSMg01no143_f13.g1 CHROMAT_FILE:
MSMg01no143_f13.g1 PHD_FILE: MSMg01no143_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:53 2005
         (598 letters)



>mm_chr11_29062257_29063254
          Length = 998

 Score =  938 bits (485), Expect = 0.0
 Identities = 540/573 (94%), Gaps = 23/573 (4%)
 Strand = Plus / Minus

                                                                       
Query: 26  acagctgctgatgttcatgcttcttagatctagaaatttaagatatttaggaagggaagg 85
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 acagctgctgatgtccatgcttcttagatctagaaatttaagatatttaggaagggaagg 939

                                                                       
Query: 86  aaaatagtcaaataaaacccatagtttgagtgaggaagatggcttggcaggtaaaggtgc 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 aaaatagtcaaataaaacccatagtttgagtgaggaagatggcttggcaggtaaaggtgc 879

                                                                       
Query: 146 ttgttctaagtttgatgacctgaatttgtttcttggaacccacaaagtggaaggagaaaa 205
           ||||| ||||||||||||| ||||||||||||||||||||||||||||||          
Sbjct: 878 ttgttgtaagtttgatgacttgaatttgtttcttggaacccacaaagtgg---------- 829

                                                                       
Query: 206 ccaactcttacaagttgtactgattcccacccatgcacagtagtttgtaagttcacaaaa 265
                        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 -------------gttgtactgattcccacccatgcacagtagtttgtaagttcacaaaa 782

                                                                       
Query: 266 taaataaacgtaaaaagaattgaacactaacttatgtcaaaatagaggtcataaaggaac 325
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 781 taaataaacgtaaaaagaattgaacactaacttatgtcaaaataaaggtcataaaggaac 722

                                                                       
Query: 326 aacctgtaagtactataaatcagtttttggcatatgatagtccaagattaaacacttaga 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aacctgtaagtactataaatcagtttttggcatatgatagtccaagattaaacacttaga 662

                                                                       
Query: 386 aattatgggaaactaccatgatttaaataaagatgagcagatgctctggctggcacgtgt 445
           |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 661 aattatggaaaactaccatgatttaaataaagataagcagatgctctggctggcacgtgt 602

                                                                       
Query: 446 ggtaggctcctgtcttaagcagaagtgatggtgcttcaattgttggtattagtgagctgt 505
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 601 ggtaggctcctgtcttaagcagaagtgatggtgcttcaattgttggtattagtgagctat 542

                                                                       
Query: 506 ctgtttaattctgtagcactcccttggagttccaagaattggctttgttttttccaaatt 565
           |||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct: 541 ctgtttaattctgtagcattctcttggagttctaagaattggctttgttttttccaaatt 482

                                            
Query: 566 gttagcagtttagcatacctttgatgcctttga 598
           |||||||||||||||||||||||||||||||||
Sbjct: 481 gttagcagtttagcatacctttgatgcctttga 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)